PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0116
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 155aa    MW: 17145.6 Da    PI: 7.2898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0116genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.0001449841454
                 HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 d++ ++++ L++l+ +      +K + a++L +A+ YI+ L
  Gh_D02G0116 49 DQVSERIAALQQLVSPY-----GKTDTASVLLEAMGYIRFL 84
                 78999*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.693584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-53889No hitNo description
SuperFamilySSF474591.83E-104497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-74593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MQMQALCSCE EAIDIGTMME NKRNPFSVDH TGFTSLASKR QKATKEKKDQ VSERIAALQQ  60
LVSPYGKTDT ASVLLEAMGY IRFLHEQVKV LSAPYLQTIP ANSLQDDDQY SLRNRGLCLA  120
PVSCTVGLAR SNGADIWAPV KTTSPKFDEV ISQFN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.43150.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2658603e-81GU265860.1 Gossypium hirsutum chromosome 14 SNP marker NG0207159 associated with bacterial blight resistance genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481480.11e-114PREDICTED: transcription factor bHLH113-like isoform X1
RefseqXP_016684586.11e-114PREDICTED: transcription factor bHLH113-like isoform X3
SwissprotQ7XJU23e-58BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A0D2N6J41e-113A0A0D2N6J4_GOSRA; Uncharacterized protein
TrEMBLA0A1U8J2L51e-113A0A1U8J2L5_GOSHI; transcription factor bHLH113-like isoform X3
STRINGGorai.005G012400.11e-114(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-60bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]