PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0122
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 422aa    MW: 47384.8 Da    PI: 4.3342
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0122genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.83.9e-1471373109
          NAM   3 pGfrFhPtdeelvveyLkkk.vegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgk...................rknra 77 
                  +G+ F+P+++ l+  yL+ + + g++  ++++i+   di++++PwdLp   +v+ +++e +f  ++  kya++k                     nra
  Gh_D02G0122   7 KGYGFNPSEQILI-GYLRDRtLFGRDYLVQDIIDLShDICSYDPWDLPgcDSVTPNDSERFFIYPKTYKYANSKskvigtptgqvpnsdqrqpMINRA 103
                  799*******999.56655516777777778888777***********53366668899***********9766455555555566655554445666 PP

          NAM  78 tksgyWkatgkdkevlsk..kgelvglkktLvfy 109
                  tk+g Wk +g   ++ s+  +++++g+k+++ + 
  Gh_D02G0122 104 TKNGNWKVSGVRVNINSRdeTKQVIGIKTSFELV 137
                  ****************99777778****998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.1665174IPR003441NAC domain
SuperFamilySSF1019416.67E-157136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MNNPKLKGYG FNPSEQILIG YLRDRTLFGR DYLVQDIIDL SHDICSYDPW DLPGCDSVTP  60
NDSERFFIYP KTYKYANSKS KVIGTPTGQV PNSDQRQPMI NRATKNGNWK VSGVRVNINS  120
RDETKQVIGI KTSFELVGID PCQDKYFLGK VIMTEFKPTN ISSDKDFNSR VRVELGPEPL  180
VETEVTNEYE WTQSEQTNEF ITPYPVFSNF IDDGNEVISY HQSQVQVELG SESLVETEVT  240
NEYGWTQSEQ TNEFITPCPV LNSENFIDDG NEVISNHQSQ INMELIRSLE VPNIGIEDQN  300
QSYRNIGINR TVPDGSNQHN IVAVAENESS MLPSNLHDLL IQMCTILPPL DVAESSYSTD  360
SVRKRSALLV EGSGTGVETE LAQQQAKRTV SLCFIEVLSL CFACCCRSDL YRFAAAVGSG  420
LQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.34951e-164ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738639841e-164
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481487.10.0PREDICTED: uncharacterized protein LOC105796356 isoform X2
RefseqXP_016713909.10.0PREDICTED: uncharacterized protein LOC107927358
TrEMBLA0A2P5Q0D60.0A0A2P5Q0D6_GOSBA; Uncharacterized protein
STRINGGorai.005G013300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.22e-13NAC 014