PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0123
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 370aa    MW: 42452.2 Da    PI: 4.7386
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0123genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.61e-1871543128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgk...................rknra 77 
                  +G+ F+P+++ l+  yL+ ++++ +   ++++i+   di++++PwdLp   +++ +++e +f  ++  kya++k                     nra
  Gh_D02G0123   7 KGYGFNPSEQILI-GYLRDRTTSGRdYLVQDIIDLShDICSYDPWDLPgcDSITPHDSERFFIYPKTYKYANSKskvigtpteqvpnsdqrqpMINRA 103
                  799*******999.67777665555266667787767***********5336667899************9766455555555555555544445666 PP

          NAM  78 tksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  tk+g Wk +g   +v+s+  +++++g+k+ L f +++ p+  kt+ v+h+++l
  Gh_D02G0123 104 TKNGKWKVSGVRVNVKSSdeTKQVIGIKTRLYFKHNNCPN--KTSCVLHQFEL 154
                  ***************998777788*********9666666..*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.8115172IPR003441NAC domain
PfamPF023653.3E-77154IPR003441NAC domain
SuperFamilySSF1019411.09E-187172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNNLKLKGYG FNPSEQILIG YLRDRTTSGR DYLVQDIIDL SHDICSYDPW DLPGCDSITP  60
HDSERFFIYP KTYKYANSKS KVIGTPTEQV PNSDQRQPMI NRATKNGKWK VSGVRVNVKS  120
SDETKQVIGI KTRLYFKHNN CPNKTSCVLH QFELVDIDPC QDKYFLGKVI MKEFKPTNIS  180
SNNLNDRISI PEVRVELGPE PLVETEVTNE YEWTQSEQTN EFITPYPVFD NENSIDDGNE  240
GISNYQSQIR VELGLEPLAK EYGWTQSERT NEFRTPCPVF DNENFIDDGN EVSSNHQSQE  300
WSDLYKLCRF INQQRAAGAE IEFPNLPPLD VAESSYSTDS VRKRSAMEVE RLATGVETEL  360
AQQQAKRSRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.34950.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738639840.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684467.10.0PREDICTED: NAC domain-containing protein 86-like isoform X2
TrEMBLA0A1U8J2A20.0A0A1U8J2A2_GOSHI; NAC domain-containing protein 86-like isoform X2
STRINGGorai.005G013300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.14e-17NAC 014