PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0124
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 514aa    MW: 58482.7 Da    PI: 4.1354
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0124genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM613.9e-1971543128
          NAM   3 pGfrFhPtdeelvveyLkkk.vegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgk...................rknra 77 
                  +G+ F+P+d+ l+ +yL+ + + g++  ++++i+   di++++PwdLp+  +++ +++e +f  ++  kya++k                     nra
  Gh_D02G0124   7 KGYGFKPSDQILI-DYLRDRtLFGRDYLVQDIIDLGhDICNYDPWDLPScdSITPSDSERFFIYPKTYKYANSKskvigtptgqvpkgeqrqpMINRA 103
                  799*********9.77777625566666667777657***********4346666899************9766455555555566655554455666 PP

          NAM  78 tksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  tk+g Wk +g   +v+s   +++++g+k+ L f +++ p+  kt W++ +++l
  Gh_D02G0124 104 TKNGNWKVSGDPVDVKSGddTKQVIGIKTRLYFRHNSCPN--KTPWMLYQFEL 154
                  ***************998777888*********9766666..********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.95172IPR003441NAC domain
SuperFamilySSF1019413.53E-217172IPR003441NAC domain
PfamPF023652.0E-77154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MNNPKLKGYG FKPSDQILID YLRDRTLFGR DYLVQDIIDL GHDICNYDPW DLPSCDSITP  60
SDSERFFIYP KTYKYANSKS KVIGTPTGQV PKGEQRQPMI NRATKNGNWK VSGDPVDVKS  120
GDDTKQVIGI KTRLYFRHNS CPNKTPWMLY QFELVDIDPC KDKYFLGKVI MKKPTNISSN  180
NIDDQISIPQ VRAELGLEPL VETEVTNEYE WTQSEQTNEF ITPYPVFNNE NFIDDGNEVI  240
SHHQSQVQVE LSSESLVETE VTNEYGLTQS EQTNEFITPC PVFDNENFID DWNEVISNHQ  300
SQVQVELSSE PLVEIEVTNE YRWTQSEQTN EFITPCPVLD IDDGNEVISN NQSQINMEII  360
RSLEVLLGIV DQNQSYQNIG IDNDRTVPDE GSNQHSIVAE NESSILPSDL HNHLIDFINQ  420
MEWSDLYNLC RSIGVFLDEL PDEPQELGPQ NQCGINQQLA AGAKIDCTNL PPSDVAESSY  480
STDSVRKRSA MEVERLATGV ETELAQQQAK RSRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.34951e-132ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738639841e-132
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684450.10.0PREDICTED: uncharacterized protein LOC107902846
TrEMBLA0A1U8J2960.0A0A1U8J296_GOSHI; uncharacterized protein LOC107902846
STRINGGorai.005G013300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.11e-17NAC domain containing protein 89