PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0131

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 665aa MW: 77156 Da PI: 6.3754

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0131	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	85.5	8.9e-27	11	357	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lLl+cAea+++gdl+ a+a+L + l + p+ + R+++yf+ AL +r ++ l+p ++s + ++ + P++ Gh_D02G0131 11 NLLLSCAEAIEDGDLKSADAFLHDILILadQRPYCsRDESRVVKYFADALVRRAYG--------LHPASSS---LTFHV-------HPAPYYHYNSYH 90 79*******************9988844344444899*************........5555554...33333.......344555555554 PP GRAS 98 aN....qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe..fnvlvakrledl 189 N + I +a+ g++r+H iDf+i + + l++L s ++p +R+ + +p + e ++ e L+k A+e++v++e +v++ ++l+++ Gh_D02G0131 91 INgvieKVIGDAFMGNRRLHLIDFSIPYYRFQNSVLRTLPSFFGDPLPVRVSYILPPFLKAYVEFSRQMEFLTKDAKEVNVKLEdeLKVVYGNSLAEV 188 44111167889*************9999********************99999999999999*********6337788999* PP GRAS 190 eleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 + e+++k+ +E+++V ++l++l+++ ++e L +k+++P +v++ + ++h++++Fl+ f ++++y + + +++++ Gh_D02G0131 189 NECEMDFKRrrdDEMVVVYYKFKLEKLVRDAEATER----ELVRLKEINPMIVIMLDFYSNHTHSNFLTCFKDSVQYSLKTYW---------AQWDNY 273 ***99999************77777766....8999***************************99554433.........333333 PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + e g+ +n+ a eg++ + rh +l +W++ +++aGF+ +pl+++ + l ++ + + + ee+++l+lg k+ p++++SaW+ Gh_D02G0131 274 LHWE-YGW-ECNIEAGEGNNIIRRHPSLTEWQHLFSMAGFSRIPLNHRKDN---LSVEDES-WLEIMGEEEECLILGNKGCPMFFLSAWK 357 3333.233.36777789999999******************987654...3333333.43455699*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.187	1	341	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-24	11	357	IPR005202	Transcription factor GRAS
SMART	SM00614	1.6E-14	614	664	IPR003656	Zinc finger, BED-type
PROSITE profile	PS50808	9.908	614	665	IPR003656	Zinc finger, BED-type
Pfam	PF02892	1.3E-6	617	657	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	5.12E-6	617	661	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence Send to blast
MASSFSETAL NLLLSCAEAI EDGDLKSADA FLHDILILAD QRPYCSRDES RVVKYFADAL 60 VRRAYGLHPA SSSLTFHVHP APYYHYNSYH INGVIEKVIG DAFMGNRRLH LIDFSIPYYR 120 FQNSVLRTLP SFFGDPLPVR VSYILPPFLK AYVEFSRQME FLTKDAKEVN VKLEDELKVV 180 YGNSLAEVNE CEMDFKRRRD DEMVVVYYKF KLEKLVRDAE ATERELVRLK EINPMIVIML 240 DFYSNHTHSN FLTCFKDSVQ YSLKTYWAQW DNYLHWEYGW ECNIEAGEGN NIIRRHPSLT 300 EWQHLFSMAG FSRIPLNHRK DNLSVEDESW LEIMGEEEEC LILGNKGCPM FFLSAWKPKV 360 EDGHFNFIST NHKFGQGFNP NPLPPQPLQP FLEGLILNRL AALAEIHDIS KYLCCKYKLS 420 FALTWVAKVN NMNETISDPN KKHTFFIQSN SCYVKDRKFY DFLFVSEDMI IEKAFESRNG 480 YHFEPSLTKA ENYRYFSLEY YNIDAAVAIC LQNRHTSDEI YVVEFYWPPT ESEISKSIVL 540 RIFDDLKHMK TTFVTVKVQG PEIKFQEEAI SSIPISSNTA MPLKITEEAS DIFAIEINAH 600 IEQIVETKRN KQRKSWSKVW VDFDKVEEDG KQVAKCKHCP KVLTGSSKSG TTHLNNHSKV 660 CPANV

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence Send to blast

MASSFSETAL NLLLSCAEAI EDGDLKSADA FLHDILILAD QRPYCSRDES RVVKYFADAL  60
VRRAYGLHPA SSSLTFHVHP APYYHYNSYH INGVIEKVIG DAFMGNRRLH LIDFSIPYYR  120
FQNSVLRTLP SFFGDPLPVR VSYILPPFLK AYVEFSRQME FLTKDAKEVN VKLEDELKVV  180
YGNSLAEVNE CEMDFKRRRD DEMVVVYYKF KLEKLVRDAE ATERELVRLK EINPMIVIML  240
DFYSNHTHSN FLTCFKDSVQ YSLKTYWAQW DNYLHWEYGW ECNIEAGEGN NIIRRHPSLT  300
EWQHLFSMAG FSRIPLNHRK DNLSVEDESW LEIMGEEEEC LILGNKGCPM FFLSAWKPKV  360
EDGHFNFIST NHKFGQGFNP NPLPPQPLQP FLEGLILNRL AALAEIHDIS KYLCCKYKLS  420
FALTWVAKVN NMNETISDPN KKHTFFIQSN SCYVKDRKFY DFLFVSEDMI IEKAFESRNG  480
YHFEPSLTKA ENYRYFSLEY YNIDAAVAIC LQNRHTSDEI YVVEFYWPPT ESEISKSIVL  540
RIFDDLKHMK TTFVTVKVQG PEIKFQEEAI SSIPISSNTA MPLKITEEAS DIFAIEINAH  600
IEQIVETKRN KQRKSWSKVW VDFDKVEEDG KQVAKCKHCP KVLTGSSKSG TTHLNNHSKV  660
CPANV

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	72278395	0.0

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583793	4e-50	JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016728580.1	0.0	PREDICTED: DELLA protein GAI-like
TrEMBL	A0A1U8MP52	0.0	A0A1U8MP52_GOSHI; DELLA protein GAI-like
STRING	Gorai.005G031000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36200	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-30	GRAS family protein