PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0148

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 386aa MW: 41917.7 Da PI: 6.4429

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0148	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.3e-10	207	265	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l+ l+ +l++e+ Gh_D02G0148 207 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLSLLQRDTGTLTAEN 265 9***********************************************99888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-16	203	267	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.967	205	268	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.5E-9	207	264	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	207	261	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.8E-11	207	261	No hit	No description
CDD	cd14703	1.13E-25	208	257	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MEKDKSPGLP PPSGRYTGFA AVGNVLNSTG CFGQSSDANR FSQDISKMPD NPPKNLGHRR 60 AHSEILTLPD DISFDSDLGV VGAADGPSYS DDTGEDMFSM FIDMDKFNSS SATSTFQVGE 120 SSAPAAAPAT AHMAAAAWTG MNGENQSVTV GSSEKPRVRH QHSQSMDGST SIKPEMLMSG 180 AEEVSPAEAK KALSATKLAE LAIIDPKRAK RIWANRQSAA RSKERKMRYI AELERKVQTL 240 QTEATSLSAQ LSLLQRDTGT LTAENNELKL RLTTMEQQVH LQDALNEALK DEIQHLKVLT 300 GQSIPNGGPM MNYASYGTNQ QYYPNNQAMH TLLTAQQFQQ LQIQSQKQPH PFQLQHQTGD 360 MGVRGPVPTP NHKDASSDVS LTATKD

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MEKDKSPGLP PPSGRYTGFA AVGNVLNSTG CFGQSSDANR FSQDISKMPD NPPKNLGHRR  60
AHSEILTLPD DISFDSDLGV VGAADGPSYS DDTGEDMFSM FIDMDKFNSS SATSTFQVGE  120
SSAPAAAPAT AHMAAAAWTG MNGENQSVTV GSSEKPRVRH QHSQSMDGST SIKPEMLMSG  180
AEEVSPAEAK KALSATKLAE LAIIDPKRAK RIWANRQSAA RSKERKMRYI AELERKVQTL  240
QTEATSLSAQ LSLLQRDTGT LTAENNELKL RLTTMEQQVH LQDALNEALK DEIQHLKVLT  300
GQSIPNGGPM MNYASYGTNQ QYYPNNQAMH TLLTAQQFQQ LQIQSQKQPH PFQLQHQTGD  360
MGVRGPVPTP NHKDASSDVS LTATKD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.14573	1e-163	boll\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589764	7e-66	JX589764.1 Gossypium hirsutum clone NBRI_GE24526 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016727438.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-153	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A1U8MPJ0	0.0	A0A1U8MPJ0_GOSHI; probable transcription factor PosF21
STRING	Gorai.005G015900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-150	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]