PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0187
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 254aa    MW: 29599.1 Da    PI: 5.1995
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0187genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.52.5e-2731322128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    GfrF+Ptdee++ e L +kv+g++ ++++++i + diy++eP++L+ +  ++  +++e y++++r++ +      + ++ +g Wkat + k+v s 
  Gh_D02G0187   3 LTGFRFSPTDEEVI-EILGQKVSGNTsMTAFDFIIQKDIYDFEPQELHgSesTIGLNKNERYYYCRRETDS------REVMGRGWWKATSHLKAVSSP 93 
                  57************.88999*999997888899**************84344555588899*****98753......447889*************** PP

          NAM  96 kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                  +ge++g k+ L+f+      +g+++ + ktdW+mhey l
  Gh_D02G0187  94 NGEVMGYKRPLTFHrfkdniQGNRKGAIKTDWIMHEYGL 132
                  **************88877779999999*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.0562147IPR003441NAC domain
SuperFamilySSF1019413.27E-303147IPR003441NAC domain
PfamPF023655.7E-154131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVLTGFRFSP TDEEVIEILG QKVSGNTSMT AFDFIIQKDI YDFEPQELHG SESTIGLNKN  60
ERYYYCRRET DSREVMGRGW WKATSHLKAV SSPNGEVMGY KRPLTFHRFK DNIQGNRKGA  120
IKTDWIMHEY GLQSIHTEWR LCKIKYKGKE KVEEDMTPME KTLHSNNKTL LTSFEAKDGS  180
SSRSNSIAPM QLELAFEQPP LTQPILPVST DINYYYDSYC WSNSNIYEDH QLADQLDTLS  240
EQPFSDLWSW DDYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-14515018171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5868703e-55JX586870.1 Gossypium hirsutum clone NBRI_GE20805 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722843.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1U8MB780.0A0A1U8MB78_GOSHI; NAC domain-containing protein 83-like
STRINGGorai.005G020600.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16224614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.19e-19NAC domain containing protein 94