PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0246

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 494aa MW: 55462.8 Da PI: 5.0433

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0246	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.1	3.3e-34	24	114	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d+++++++sws+n++sfvv+++ +fa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++++ll++i+ Gh_D02G0246 24 FLMKTFDMVDDSSTDDIVSWSSNKKSFVVWNPPDFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQRHLLKNIH 111 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Gh_D02G0246 112 RRK 114 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.4E-37	20	113	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.2E-59	20	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.07E-35	20	113	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.2E-18	24	47	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.9E-30	24	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	63	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	75	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MDPTAPSASV VGGGGGGGGG PAPFLMKTFD MVDDSSTDDI VSWSSNKKSF VVWNPPDFAR 60 LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFANEDFV KDQRHLLKNI HRRKPIHSHS 120 NPQGSLIDHE RAGYEEEIEK LSREKAALEA DVLRSEQERS ALKHQVEELT QQADQMERRQ 180 DTLFNFLEKA LQDPAFAEHL FRRIESMDDV VAYNKKRRLP QIDQTKPVGD HSLLDNKSSS 240 TPEFGNVVHL DFSNKLRLEL SSAVSEINLV SQSTQSSNED GESPQRRVSQ GEPKDDNIRP 300 QGLLFTPETL DISDTGTSFT FNMDSSFSQR VSMNESPAVH SLQQRLSSNE EPDSHISCQL 360 NLTLASSSLQ VNKSPSLTRM SQPSWEIGKV SESRSNANSK DSDSGPFHNS RNMIDGETTL 420 SSSKEGPNTN QEPAAAPVRV NDVFWEQFLT ERPGSSDNEE ASSNYRANPY EEQDDKRSGH 480 GLARNTKNIE QLSL

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MDPTAPSASV VGGGGGGGGG PAPFLMKTFD MVDDSSTDDI VSWSSNKKSF VVWNPPDFAR  60
LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFANEDFV KDQRHLLKNI HRRKPIHSHS  120
NPQGSLIDHE RAGYEEEIEK LSREKAALEA DVLRSEQERS ALKHQVEELT QQADQMERRQ  180
DTLFNFLEKA LQDPAFAEHL FRRIESMDDV VAYNKKRRLP QIDQTKPVGD HSLLDNKSSS  240
TPEFGNVVHL DFSNKLRLEL SSAVSEINLV SQSTQSSNED GESPQRRVSQ GEPKDDNIRP  300
QGLLFTPETL DISDTGTSFT FNMDSSFSQR VSMNESPAVH SLQQRLSSNE EPDSHISCQL  360
NLTLASSSLQ VNKSPSLTRM SQPSWEIGKV SESRSNANSK DSDSGPFHNS RNMIDGETTL  420
SSSKEGPNTN QEPAAAPVRV NDVFWEQFLT ERPGSSDNEE ASSNYRANPY EEQDDKRSGH  480
GLARNTKNIE QLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-20	11	113	16	129	Heat shock factor protein 1
5d5v_B	2e-20	11	113	16	129	Heat shock factor protein 1
5d5v_D	2e-20	11	113	16	129	Heat shock factor protein 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19829	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ748616	0.0	KJ748616.1 Gossypium hirsutum HSF13 (HSF13) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481655.1	0.0	PREDICTED: heat stress transcription factor A-5-like isoform X1
Refseq	XP_016722411.1	0.0	PREDICTED: heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-172	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A0D2REN8	0.0	A0A0D2REN8_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8M6H2	0.0	A0A1U8M6H2_GOSHI; heat stress transcription factor A-5-like
STRING	Gorai.005G027500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-174	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]