PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0276
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 1821aa    MW: 208520 Da    PI: 6.2031
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0276genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS74.12.6e-23113593374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  +lLl cAea++++dl+ a+a+L  +  la ++    +    +++yf+ AL +r ++        l+p ++          ++++ ++  P+++     
  Gh_D02G0276  11 RLLLFCAEAIENRDLKSADAFLLVILILADKRHywfRDDSIVVKYFAYALVSRAYG--------LHPASS----------YFTFPVDPAPYYQYNSCH 90 
                  78999****************999999877766334567789*************9........333222..........233335666676666666 PP

         GRAS  98 aN....qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe..fnvlvakrledl 189
                   N    + I +a+ g++r+H iDf+i + +   + l +L +   +  ++R+  + +p  ++  e ++  e L++ A+e++v++e   +v++ ++l+++
  Gh_D02G0276  91 INgvikKVIDDALMGNRRLHLIDFNIPYYGFEGSVLSTLPNFFCDRLRVRVSYILPPFLKEYVEFSRQMEFLTEDAKEVNVELEdeLKVVYGNSLAEV 188
                  6611114566788889**********999889999999999999999*********99999999999999*************6337788999***** PP

         GRAS 190 eleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                  +  e+++k+   +E+++V   ++l++l+++  +++      L  +k+++P++v++ +  ++h++++Fl+ f ++++y  + +d +++    +   + k
  Gh_D02G0276 189 DECEIDFKRrrdDEMVVVYYKFKLEKLVRDAKAMKR----ELVRLKEINPTIVIILDFYSNHSDSDFLTCFKDSFQYSLKTLDYWQEL---DRYLDGK 279
                  *******99999****************88888877....8999*****************************************777...2222223 PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         ++  n+ a eg++ + rh tl +W++ +++aGF+ +pl+++  +   l ++  ++    + ee+++l+lg k+ p++++SaW+
  Gh_D02G0276 280 K------EWEFNIEAGEGNNIIRRHPTLTEWQHLFSTAGFSRIPLNHRKDN---LSVEDNSFL-KIMREEEECLILGYKGCPMFFLSAWK 359
                  3......333578899*****************************987654...445555532.3566999******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.6961343IPR005202Transcription factor GRAS
PfamPF035149.1E-2111359IPR005202Transcription factor GRAS
PROSITE profilePS508089.802620674IPR003656Zinc finger, BED-type
SMARTSM006141.2E-14620670IPR003656Zinc finger, BED-type
PfamPF028921.4E-5623663IPR003656Zinc finger, BED-type
SuperFamilySSF576671.79E-5623672No hitNo description
SuperFamilySSF530981.67E-387641198IPR012337Ribonuclease H-like domain
PfamPF143723.7E-179791073IPR025525hAT-like transposase, RNase-H fold
PfamPF056991.5E-1411161197IPR008906HAT, C-terminal dimerisation domain
PROSITE profilePS5060014.44413911569IPR003653Ulp1 protease family, C-terminal catalytic domain
SuperFamilySSF540012.16E-2214121583No hitNo description
PfamPF029021.3E-1214171581IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1309.6E-814431564No hitNo description
Gene3DG3DSA:2.20.25.301.9E-1916561700IPR011331Ribosomal protein L37ae/L37e
SuperFamilySSF578291.04E-1316561700IPR011332Zinc-binding ribosomal protein
PfamPF019071.0E-1716571701IPR001569Ribosomal protein L37e
PROSITE patternPS01077016581677IPR018267Ribosomal protein L37e, conserved site
ProDomPD0051322.0E-1516631700IPR001569Ribosomal protein L37e
Gene3DG3DSA:2.40.30.107.7E-2717061802No hitNo description
SuperFamilySSF504473.53E-2317071801IPR009000Translation protein, beta-barrel domain
CDDcd036925.69E-3117111793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0006508Biological Processproteolysis
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1821 aa     Download sequence    Send to blast
MDYSFSDTAL RLLLFCAEAI ENRDLKSADA FLLVILILAD KRHYWFRDDS IVVKYFAYAL  60
VSRAYGLHPA SSYFTFPVDP APYYQYNSCH INGVIKKVID DALMGNRRLH LIDFNIPYYG  120
FEGSVLSTLP NFFCDRLRVR VSYILPPFLK EYVEFSRQME FLTEDAKEVN VELEDELKVV  180
YGNSLAEVDE CEIDFKRRRD DEMVVVYYKF KLEKLVRDAK AMKRELVRLK EINPTIVIIL  240
DFYSNHSDSD FLTCFKDSFQ YSLKTLDYWQ ELDRYLDGKK EWEFNIEAGE GNNIIRRHPT  300
LTEWQHLFST AGFSRIPLNH RKDNLSVEDN SFLKIMREEE ECLILGYKGC PMFFLSAWKP  360
KVEDGHFNSN STNYKFDQGF NPNPLPLQPL QPFPEGSILN RLAALAEIHN ISKDLCCKYK  420
LSLALTWASK VNNMNGTISD PNKKHTFFIQ SNYCYVKDRK SYDFMFGFER MISVPIFEKA  480
FESRDGYHFE PSLTEVEDFK YFMLKDCNID VALAICLQNL HTSDEVYVVE FYWPPTESEI  540
SKSLALRIFD DLKHMKTTFV TVKVQGPEIK FQEEAISSIP TSSNTAMPLK IAEEARGIRA  600
KEINAHIEQI VETKRNKQRK LRSKVWVDFH KSEEEGKQVA KCKHCPKVLT GSSKSGTTHL  660
NNHSKVCPGK KKQNQESQLI LPVDTNERSS TFDQERSHLA LVKMVIRHQY PLDLAGQEAF  720
KNFVKGLQPM YEFQSRDKLL SDIHRIYNEE REKLQLYFDQ LACKLNLTVS LSKNNHGKTA  780
YCCLIAHFID DSWELKMKTL GLRTLEHIND TKAVGGIIQS LVSEWNIGNK VCSITVDNSF  840
LDDSMVQQIK ENCLSNLVSL SSSHWFINCT LLEDGFREMD DLLFKLKKSI EYVTETKHGR  900
LKFQEAVDQV KLQDGKSWDD LSLKLASDFG ILDSALRSRE IFCKLEQIDG NFKLNPSMEE  960
WENAAALQSC LRCFDDIKGT QSLTVSLYLL KLCDIYMKFL QLEKSNPSFV TLMKRRFDHY  1020
WRLCNSALAV ASVLDPRLKF KVVEFSYKVI YGHDSKVQLN TFREVLTNVY NEYANETKNQ  1080
TTSASVLDDI NWPGNNSIWD SFSKFVTASE ASSKSELELY LDEHLIPMDG AIFDILGWWS  1140
DKSQMFPILA KMARDFLAIP VSIFIPCSNI KATINNPAYN ILNPESMEAL VCSENWLETP  1200
KGNDGENHEP TQTMDKGKRK LDEDTCVRKK SKPSNCEKAI STEDIDKDSN NNDEPAGEIS  1260
IGKLQTENSS RNGCYGETSS GNKSKASNKM MGTISLRAIH QEKSSSELNH GRNVEDVSSG  1320
DSSSDNDQSD QLQSSSSESD VEITLKEQGS WSEQDIKAYL LSEFTEKENE LIDKWQKNEL  1380
KGKMIGRDKY FKIQGEKLAP LLMVPQGDET REEYYIEDLV VNTFFELLKK RSDKFPNVYI  1440
NHYSFGSQIA TQLIEGPRTE QEVLAWVKVD ELRGVHKMFL PMSLSKHWVL FYVDTKEKKI  1500
SWLDPIASSR IRSYNVEKDI ILQWFTTLLL PKLGYVDAEE WPFLVRNDIP EQKNLVDCAV  1560
FVMKYGDCLT HGDYFPFKQE DMACILPMQQ AHNQTGVWFA VITLQPESVT GRLTPLRVIA  1620
ITAPQRGLGI PLAFHLFFSI FCPHQASESP TFPFQGKGTG SFGKRRNKTH TLCVRCGRRS  1680
FHLQKSRCSA CAFPAARKRT CACIQEQVPI GSAEVRAVFS SGSGRVAGCM VTEGKIVDGC  1740
GICVIRNGRT VHVSVLDSLQ RVKEIVKEVN AGLECGMEVE DYDQWQEGDI LEAFNTVQKK  1800
RTLEEASTSM AAALEGVGVE L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_Ll1e-2116561699245Ribosomal protein L37
4v7e_Cj1e-211656169924560S ribosomal protein L37E
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.125621e-169boll
Ghi.210321e-169boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5891381e-55JX589138.1 Gossypium hirsutum clone NBRI_GE23769 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722402.10.0PREDICTED: uncharacterized protein LOC107934477 isoform X3
TrEMBLA0A1U8M6G10.0A0A1U8M6G1_GOSHI; uncharacterized protein LOC107934477 isoform X3
STRINGGorai.005G031000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3620522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-24GRAS family protein