PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0406

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 234aa MW: 27388.6 Da PI: 10.1347

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0406	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.1e-08	83	131	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ +h ++Er RR++ +++++ L ++lP +K++K +i+++A+ +++L Gh_D02G0406 83 RCLKHMMNERTRREKQKKCYFALYSMLPLG-----TKNDKNSIVQMATMRVREL 131 57799*********************97.....79********9888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.74E-6	81	125	No hit	No description
SuperFamily	SSF47459	3.78E-11	81	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.538	82	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	83	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-8	86	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0036	88	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MDELIKQLLG EHGTIWYETT PVLQPVRPSA FQPYPRTPRT EPWLEAAGCN NGVRSGNVNK 60 RMIEFLRKTN WVSVISKDKQ KQRCLKHMMN ERTRREKQKK CYFALYSMLP LGTKNDKNSI 120 VQMATMRVRE LEMEREELQR RNSELLVNLG GNANNEGAKI RARIDDPSYG NDYMLEVLKC 180 LKTLDSKPRM IRTTVYNQEL VLDLATKMKA ADVENAINRT LQEVERKLEE RRTR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016714378.1	1e-174	PREDICTED: transcription factor bHLH92-like
TrEMBL	A0A1U8LLQ2	1e-173	A0A1U8LLQ2_GOSHI; transcription factor bHLH92-like
STRING	Gorai.005G046700.1	1e-170	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24448	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	5e-27	bHLH family protein