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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D02G0587 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | GRAS | ||||||||
| Protein Properties | Length: 604aa MW: 67384.2 Da PI: 4.6627 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 278.3 | 2.3e-85 | 231 | 602 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsevsPilkfsh 95
lLl++Ae v ++ e a++lL++ ++s++g+p+qR++ yf eAL++++ r ++ + +k+l+ ++ + ++ +a + + ++P+ ++s+
Gh_D02G0587 231 AALLLAAAEKVGYQQYESASRLLKQCDYMSSKTGNPVQRVVYYFSEALREKIEReTGRSSSKSLKWKPLCNF-DTDMIALNPTvlaCHGAFPFGQVSQ 327
579***************************************************666677777776666533.3444444333455899********* PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
++ qaI+e v+++++vHiiD+ i++G+QW L+qaLa R+ l+iT+v+ + k+ + tg+rL++fA++lgvpf f+v++++++ dl+
Gh_D02G0587 328 FAGIQAIVENVAEANKVHIIDLAIKNGIQWTILIQALAPRQheYRLELLKITAVAT---EAKDLIDGTGKRLSSFAQSLGVPFAFKVVMVSDMLDLKE 422
****************************************95555679********...469999********************************* PP
GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
+ ++++ +E+++ +++ ++l+ + +e+ ++k+++ ++P ++vv+e ea+hns+ F++rf+e l y+sa fd++++ + ++s++r +E ++
Gh_D02G0587 423 DFFELDAEETIVAYAAFAFRSMLATPNRIEN----IMKVLRVMNPCLMVVTEVEANHNSPIFVNRFIEVLFYFSAYFDCIATCMEQDSKNREIIESVF 516
***********************77777777....*************************************************************** PP
GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
+g i+n+va+eg++r+ r+ ++ Wr+ + + G+++++ls + qa+l+l++++ + +++ + ++l+ gWk+ p+ s+S+W+
Gh_D02G0587 517 FGDGIRNMVAAEGTDRKVRNVKFDVWRAFFVRYGMEEAELSMSSKYQADLILKTFAcGTCCTLDMNGKCLLVGWKGTPMHSISVWK 602
********************************************************9999*************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 41.933 | 204 | 581 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 7.8E-83 | 231 | 602 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 604 aa Download sequence Send to blast |
MGNDVFSFVD LNVYGAPDKL SSSNNEFESF DGGNKGKAGG FYGVEDWGET GGNDSLPSDY 60 GFYGDAPMEA SGFSFFKQDH HQQQQQQQEQ QSFIEYGLHN GVSFNAQSPL IQACFDEIAE 120 LGGINNGVYE DIGEAKKGKQ YPGLSSLGLL NNYGNGFKRL NGERKTDDDI TVSDTQDEDR 180 KLSTEEVMRV AGEMFLKSCG QTIDGISGID HPFSLSFSGF LDRETRDIEL AALLLAAAEK 240 VGYQQYESAS RLLKQCDYMS SKTGNPVQRV VYYFSEALRE KIERETGRSS SKSLKWKPLC 300 NFDTDMIALN PTVLACHGAF PFGQVSQFAG IQAIVENVAE ANKVHIIDLA IKNGIQWTIL 360 IQALAPRQHE YRLELLKITA VATEAKDLID GTGKRLSSFA QSLGVPFAFK VVMVSDMLDL 420 KEDFFELDAE ETIVAYAAFA FRSMLATPNR IENIMKVLRV MNPCLMVVTE VEANHNSPIF 480 VNRFIEVLFY FSAYFDCIAT CMEQDSKNRE IIESVFFGDG IRNMVAAEGT DRKVRNVKFD 540 VWRAFFVRYG MEEAELSMSS KYQADLILKT FACGTCCTLD MNGKCLLVGW KGTPMHSISV 600 WKFL |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3h_A | 5e-38 | 238 | 601 | 26 | 377 | Protein SCARECROW |
| 5b3h_D | 5e-38 | 238 | 601 | 26 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Ghi.13928 | 4e-54 | boll | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | JX614609 | 2e-48 | JX614609.1 Gossypium hirsutum clone NBRI_GE58134 microsatellite sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016690480.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
| TrEMBL | A0A1U8JJM6 | 0.0 | A0A1U8JJM6_GOSHI; DELLA protein RGL1-like | ||||
| STRING | Gorai.005G066300.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM15786 | 10 | 14 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G03450.1 | 2e-56 | RGA-like 2 | ||||




