PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0668

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 87aa MW: 10167 Da PI: 10.505

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0668	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.6	1.4e-05	50	86	10	50
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 + RR++i +++ L++l+P +k Ka +L + ++Y Gh_D02G0668 50 KVRREKISERMKYLQDLVPGY----NKITGKAGMLNEIINY 86 78****************8....899********999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00025	3.3E-13	5	51	IPR006689	Small GTPase superfamily, ARF/SAR type
Gene3D	G3DSA:3.40.50.300	3.9E-8	6	46	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	1.87E-5	10	52	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00328	4.3E-14	13	37	IPR006689	Small GTPase superfamily, ARF/SAR type
PROSITE profile	PS50888	11.147	40	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PRINTS	PR00328	4.3E-14	40	65	IPR006689	Small GTPase superfamily, ARF/SAR type
SuperFamily	SSF47459	3.79E-9	40	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.3E-8	47	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005525	Molecular Function	GTP binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MLEASKRLVQ HQPTQNPTLK ELSIGMIKFK AFDLGGHQIA RRVWKDYYAK VRREKISERM 60 KYLQDLVPGY NKITGKAGML NEIINYV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.11680	1e-52	boll

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109875593	1e-52

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in transport from the endoplasmic reticulum to the Golgi apparatus. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX585276	9e-62	JX585276.1 Gossypium hirsutum clone NBRI_GE18804 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016693842.1	1e-59	PREDICTED: GTP-binding protein SAR1-like
Refseq	XP_016693843.1	1e-59	PREDICTED: GTP-binding protein SAR1-like
Swissprot	P52885	2e-24	SAR1_TOBAC; GTP-binding protein SAR1
TrEMBL	A0A1U8JU89	3e-58	A0A1U8JU89_GOSHI; GTP-binding protein SAR1-like
STRING	Gorai.001G223600.1	5e-50	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16325	3	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	9e-18	cryptochrome-interacting basic-helix-loop-helix 1

Publications ? help Back to Top
Hanton SL, et al. Plant Sar1 isoforms with near-identical protein sequences exhibit different localisations and effects on secretion. Plant Mol. Biol., 2008. 67(3): p. 283-94 [PMID:18322804]