PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0722
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 261aa    MW: 29435.8 Da    PI: 4.7086
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0722genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.11.6e-373087461
       zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 +a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ 
  Gh_D02G0722 30 TAPNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRG 87
                 5679**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-271476IPR003851Zinc finger, Dof-type
PfamPF027016.7E-323186IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5093286IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103470IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MFILGDQMLQ SDPRVPILPI ERKWKSNVET APNCPRCASA NTKFCYYNNY SLSQPRYFCK  60
GCRRYWTKGG SLRNVPVGGG CRKSRRGKSR RERVEKRDQI SMTDSKNSTS SSDGDSGNQP  120
DIDLALVFAK FLNHNTSFDQ PEVDEIATQE SPNEENNSQK PVVGSIPGSY ILQEMPETSQ  180
MEAFGLQNLL TGDEMVLHED LWSDHDVATT TPDLEWQPLV QLQQFESFPV DEQLKVSANL  240
MNEDWGSFDL SGFGIFSKPS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18491RRGKSRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3941603e-89GQ394160.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1125 SSR marker CGR6706 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482447.10.0PREDICTED: dof zinc finger protein DOF3.5-like
TrEMBLA0A2P5RLD20.0A0A2P5RLD2_GOSBA; Uncharacterized protein
STRINGGorai.005G081000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.12e-31Dof family protein