PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0748
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 555aa    MW: 61675.2 Da    PI: 5
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0748genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.53e-1351875543373
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  + L+ecA  +s+g+ e+a+a++++l++ +s +gdp qR+aay++e+Laar+a s++ lykal+++e +   ss++laa+++++ev+P++kf++++aN 
  Gh_D02G0748 187 QMLIECAAILSEGHIEKASAIINELRQKVSIQGDPPQRIAAYMVEGLAARMAASGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFMAANG 281
                  79*****************************************************************9...9************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea++ge+rvHiiDfdisqG Q+++L+q++a+ p++pp+lR+Tgv++pes+   +  le +g rL+k+Ae lgvpfef++ v +r++ + +++L++
  Gh_D02G0748 282 AIIEAFKGEKRVHIIDFDISQGSQYITLIQTIAKLPGKPPHLRLTGVDDPESVqrLNGGLEIVGLRLEKLAEILGVPFEFRA-VPSRTSLVAPSMLDC 378
                  ***************************************************99777889***********************.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  kpgEal+Vn+++ lh+++desvs+ ++rd++L++vks++Pk+v+vveq++++n+++F+ rf+ea +yysa+fdsl+a+lpres++r++vEr++l+r+i
  Gh_D02G0748 379 KPGEALIVNFAFLLHHMPDESVSTINQRDQLLRMVKSMNPKLVTVVEQDVNTNTSPFFPRFIEAYSYYSAVFDSLDATLPRESQDRMNVERQCLARDI 476
                  ************************************************************************************************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  vn++aceg+er+er e ++kWr+r+ +aGFk+ p+s+++ ++++ l++++ ++ y+++e+ g+l +gW+d++L+++SaW
  Gh_D02G0748 477 VNIIACEGEERIERYEVAGKWRARMIMAGFKSCPMSSNVIDTIQKLIKEYCDR-YKLKEDVGALHFGWEDKSLIVASAW 554
                  ***************************************************66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.423159536IPR005202Transcription factor GRAS
PfamPF035141.1E-132187554IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MSLVRSAEPA TASCRNTNLY SIQDSSDSTG MAIRMFGSDK HKPVYVMDSY SSESYEKYFL  60
DSPTDELIHS SSSGISGSSV RLQDVSSCQI RDYLEIQSPD TLDSDLDKMK LKLKELERAL  120
LADNDVDGDD DMFGTGLSME VDGEWSDPIR MGSHHDSPKE SSSSGTYLDS VSGNKEVSHV  180
SSQTPKQMLI ECAAILSEGH IEKASAIINE LRQKVSIQGD PPQRIAAYMV EGLAARMAAS  240
GKCLYKALRC KEPPSSDRLA AMQILFEVCP CFKFGFMAAN GAIIEAFKGE KRVHIIDFDI  300
SQGSQYITLI QTIAKLPGKP PHLRLTGVDD PESVQRLNGG LEIVGLRLEK LAEILGVPFE  360
FRAVPSRTSL VAPSMLDCKP GEALIVNFAF LLHHMPDESV STINQRDQLL RMVKSMNPKL  420
VTVVEQDVNT NTSPFFPRFI EAYSYYSAVF DSLDATLPRE SQDRMNVERQ CLARDIVNII  480
ACEGEERIER YEVAGKWRAR MIMAGFKSCP MSSNVIDTIQ KLIKEYCDRY KLKEDVGALH  540
FGWEDKSLIV ASAWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6619155525379Protein SCARECROW
5b3h_A2e-6619155524378Protein SCARECROW
5b3h_D2e-6619155524378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.93020.0boll| ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693733.10.0PREDICTED: scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1U8JYA70.0A0A1U8JYA7_GOSHI; scarecrow-like protein 1 isoform X1
STRINGGorai.005G083700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]