PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0824

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 338aa MW: 38304.9 Da PI: 6.2449

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0824	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.8	3.5e-11	63	101	4	42
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 +k +rr+++NReAAr+sR+RKka++++Le +L + Gh_D02G0824 63 DKTQRRLAQNREAARKSRLRKKAYVQQLESSRLQLAQLE 101 799**************************8665555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.0E-8	55	107	No hit	No description
SMART	SM00338	1.2E-6	60	120	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.163	62	106	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.7E-8	63	104	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-7	64	107	No hit	No description
CDD	cd14708	8.94E-22	64	116	No hit	No description
PROSITE pattern	PS00036	0	67	82	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.4E-27	151	226	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MTIYEQLNQI SRWGDSFNRG DSPNTGSSTI VEGDVRLENK AGYISCDQVE PSRSDQETNK 60 PIDKTQRRLA QNREAARKSR LRKKAYVQQL ESSRLQLAQL EQELERTRQQ GIYISSPSDT 120 GYFGLPGTVN SGITAFEMEY GHWVEVQNKQ TCELRSALQA HITDIELQIL VEHGLNHYCN 180 LFRMKADAAK ADVFYLSSGI WRTSAERFFH WIGGFRPSEL SNVVMSHIEP LTDQQQLEVC 240 NLRQSSQQAE DALSQGIDKL QQNFSCSVAS DLSWGHYRAQ MAAATDIIEA LEGFVNQADH 300 LREQTLLQMV RILTTHQAAR GLLALGDYFN RLRALSSL

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109873872	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016693953.1	0.0	PREDICTED: transcription factor TGA3-like isoform X1
Refseq	XP_016693954.1	0.0	PREDICTED: transcription factor TGA3-like isoform X1
Refseq	XP_016693955.1	0.0	PREDICTED: transcription factor TGA3-like isoform X1
Swissprot	Q93ZE2	1e-143	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A1U8JUN5	0.0	A0A1U8JUN5_GOSHI; transcription factor TGA3-like isoform X1
STRING	Gorai.005G092400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-130	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]