PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0907
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 338aa    MW: 38082.1 Da    PI: 8.4691
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0907genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.2e-35251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF ++ Fkkg+k+ll++i+
   Gh_D02G0907  25 FLTKTYQLVDDPTTDKIVSWGEDDTTFVVWGPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFGNEFFKKGEKQLLCDIH 112
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Gh_D02G0907 113 RRKTS 117
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3617109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.84E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3025114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALVLDNCEE ILLSLDSHKS VPAPFLTKTY QLVDDPTTDK IVSWGEDDTT FVVWGPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFGNEFF KKGEKQLLCD IHRRKTSQPQ  120
EAINHHYHSH SPLVNAPSFF PFPSRVSISP AASDEQANWC DSPRVGTGVS VFGGYNSSIA  180
ALSEDNEKLR RRNNLLTSEL AQMRKLYNDI IYFVQNHVKH VTPSNPYPPN MLLCGSQSAA  240
NSSLLQKHLN QLLGYYPNST KPAQVQFLNT PTAASKSSLT ILEETSRNSC KTKVFGVPLH  300
SKKRLHPECG ATNSETNKVR LVLENKDLGL NLMPPSTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-232011716123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486170.0KJ748617.1 Gossypium hirsutum HSF14 (HSF14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691054.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-106HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1U8JRZ30.0A0A1U8JRZ3_GOSHI; heat stress transcription factor B-4-like
STRINGGorai.005G102000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-109heat shock transcription factor B4