PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0909

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 402aa MW: 43612.1 Da PI: 10.0723

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0909	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50	6.7e-16	325	377	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r++r++kNRe+A rsR+RK+a++ eLe k ++L++eN++L+k+ el ++ + Gh_D02G0909 325 RRQKRMIKNRESAARSRARKQAYTTELEAKLAKLKEENEELRKKHAELMEMQK 377 79**********************************************99866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.1E-13	321	386	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.588	323	374	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-11	325	375	No hit	No description
Pfam	PF00170	1.5E-13	325	377	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.10E-27	325	379	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.3E-14	325	375	No hit	No description
PROSITE pattern	PS00036	0	328	343	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MEANMKLKNF GSNQPLPADG GGNTLLSRQP SIYSLTFDEF QSTMGGIGKD FGSMNMDELL 60 KNIWSAEETQ TMAFYSGGLD AYGGLQRQGS STLPRTLSQK TVDEVWKDIS KEYSIGKDGI 120 GTAAGTNHVP QRHQTLGEMT LEEFLVKAGV VREDTQFAGK DNNVNGGFFD GFQQGGRTPN 180 FMGNRLSEVG FQASNLPLNV NGVKSNQHQL PQQQQPIFPR QPAVGFGFQM PLQSGGQLGS 240 PGNRGGITGM GDQGPPNGLI QGGKMGMIGL GGPVSVATGS PANHFSSDGI GKSSADTSSV 300 SPVPYVLNGS SRGRKCSAVE KVAERRQKRM IKNRESAARS RARKQAYTTE LEAKLAKLKE 360 ENEELRKKHA ELMEMQKNQV MEMNMQQGPK KQCLRRTRTG PW

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MEANMKLKNF GSNQPLPADG GGNTLLSRQP SIYSLTFDEF QSTMGGIGKD FGSMNMDELL  60
KNIWSAEETQ TMAFYSGGLD AYGGLQRQGS STLPRTLSQK TVDEVWKDIS KEYSIGKDGI  120
GTAAGTNHVP QRHQTLGEMT LEEFLVKAGV VREDTQFAGK DNNVNGGFFD GFQQGGRTPN  180
FMGNRLSEVG FQASNLPLNV NGVKSNQHQL PQQQQPIFPR QPAVGFGFQM PLQSGGQLGS  240
PGNRGGITGM GDQGPPNGLI QGGKMGMIGL GGPVSVATGS PANHFSSDGI GKSSADTSSV  300
SPVPYVLNGS SRGRKCSAVE KVAERRQKRM IKNRESAARS RARKQAYTTE LEAKLAKLKE  360
ENEELRKKHA ELMEMQKNQV MEMNMQQGPK KQCLRRTRTG PW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23529	2e-88	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482747.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-124	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A2P5QIX1	0.0	A0A2P5QIX1_GOSBA; Uncharacterized protein
STRING	Gorai.005G102300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	5e-98	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]