PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1075
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 868aa    MW: 96741.9 Da    PI: 7.9571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1075genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07166187325
                  S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                  t +C+ f++ G C++G+ C+F H
  Gh_D02G1075 166 TQICKKFMA-GRCRRGSLCHFLH 187
                  789******.************* PP
2zf-CCCH20.11.1e-06292312526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f+  G C+ G+ C+F+H+
  Gh_D02G1075 292 PCKYFST-GNCHNGNYCRFSHP 312
                  7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-4163189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779163190IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-5166187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-7166188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746223250IPR000571Zinc finger, CCCH-type
SMARTSM003560.023223249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727287314IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019287313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5292317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MLRTIVEMSK SRKRSSKWDL KEERQYSLEN VQDSAWFANA CDRESEHGSF SPEFGRNGNK  60
WSAIKSKHGL PSKEYLHGSK CGENNSDCAT NWKTTTPCDG DETYSMKKSP TLNDRRQQNC  120
HHSLKSDWSR SRSRSRSRSR SRSPVHGIGR QPGFLEMTRN GSGVSTQICK KFMAGRCRRG  180
SLCHFLHQDI QSHEDGSDNR QKRASVSKYI TCNEDKYYLI ESGRSTDCCT DYRKGNCRRG  240
ASCRSAHDGV SDGFSKGSIN EISRERENNK RNKLTSPEQD VEREARKSSS IPCKYFSTGN  300
CHNGNYCRFS HPASTECDRG QWGQSSVSSD MLLDGAELTD IDASFNVDKY GNASNGSDAD  360
VSNESEIPWT GPKWSAADAS IDLHNSWAGS KQSDISVYLG ASKLNKDTNE FSNCNIDERW  420
QHGYDACGKN SESNVHCKRI DIDKEDLKKI ENVGVNTGVS EPKGAEESIV AMEMSPMWNR  480
RLHSSVDKER SHSSEPTPVG TSLRAHGKNI IEKASGHAHD EHAASQLMSI EESNFHLDHM  540
TRGSSCAVLR SFDHPGPSSS SLPYSNLNTV RQSELSFPSN EVNVKVPQNN LLLQEEKPSN  600
KLNIGDTNIL HASLAQLFGK GQQLPLLHIS LNVHDAMQVT FANSRGPVES GQEIIFPEQY  660
NPRSDSIDPA KKQDTNTEPL GFSVHPVSQE STADGKLELS AKNFLPSSLV GGRNGSDYHN  720
DHSSKRDSDF DSHKPNQLEP IASFELTKEN GGIVKKAEAE NKNGLSENTD ADDRTEEGKK  780
SKDVKGVRAF KFALVEFVKN LLKPTWKEGQ IGKEAYKSIV RKVVDKVTAT MQGTNIPRTP  840
EKIDQYLSFS KPKLSKLVHA YVEKFQKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131141RSRSRSRSRSR
2133141RSRSRSRSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478323.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like
TrEMBLA0A0D2RDI30.0A0A0D2RDI3_GOSRA; Uncharacterized protein
STRINGGorai.005G122500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15764912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-16C3H family protein