PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1135
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 354aa    MW: 39862.3 Da    PI: 7.0029
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1135genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-12200225126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd+CkF+H+
  Gh_D02G1135 200 YQPDICKDYKETGYCGYGDSCKFMHD 225
                  66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-9198230IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878199227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-12200230IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10200225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.8E-9269331IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.33E-7273313No hitNo description
PfamPF000971.4E-4278327IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS500899.789278328IPR001841Zinc finger, RING-type
SMARTSM001840.0025278327IPR001841Zinc finger, RING-type
CDDcd001621.39E-6278331No hitNo description
PROSITE patternPS005180293302IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MADSSEPQDP GKELRQSETE PQQSEQVCNF FRKPTKGKNI RKRTINEDED EDSRNGTSLL  60
HNQKKASKPD NKLYFSTGSS KSATATESST ESHKPVFQFE SSKEIQVQND SGATAILETE  120
TEFTKDARAI REKVLKRAEE ALKGKSTSSG GEKLYTGMHG YVDHKAGFRR EQTVASEKAG  180
GSHGPLRASA HIRVSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEKEWE  240
EAEKARKRNL ALGEGDDDDE AGVVQSDDDD DDTLPFACFI CRQPFVDPVV TKCKHYFCEH  300
CALKVPKQLH FGCLFQHHAK NKKCFVCNQP TLGIFNAAHE IRRKMAEEGK LKGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-6089345102317RING finger protein 113A
5z58_M2e-6089345102317RING finger protein 113A
6ff4_t2e-6089345102317RING finger protein 113A
6ff7_t2e-6089345102317RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.74980.0boll| ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738480020.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276341e-91HQ527634.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GMUBB simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693967.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like isoform X1
SwissprotQ8GX841e-172C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0D2SFW80.0A0A0D2SFW8_GOSRA; Uncharacterized protein
STRINGGorai.005G129300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-153C3H family protein