PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G1209

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 139aa MW: 15304.9 Da PI: 5.0868

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G1209	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	25.1	3.5e-08	37	59	26	48
RWP-RK 26 gvclTvLKriCRqyGIkRWPhRk 48 gv ++vLK+iC ++G++RWPh k Gh_D02G1209 37 GVFTSVLKKICHENGLDRWPHCK 59 68899***************966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	2.1E-6	37	59	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MLAVIAILIF KHGLGIPPNS LPSFSFSALI LSDVSQGVFT SVLKKICHEN GLDRWPHCKP 60 DAGLAAAILM QNLSRISMAA TAYSKGELEY AAYLSDQVTY LFDKMEECLG IVLLEALQNG 120 ATVLDLKKLE NLFYYIFDT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459805.1	4e-68	PREDICTED: uncharacterized protein LOC105780177 isoform X1
Refseq	XP_012459806.1	4e-68	PREDICTED: uncharacterized protein LOC105780177 isoform X1
TrEMBL	A0A0D2V0L2	1e-66	A0A0D2V0L2_GOSRA; Uncharacterized protein
STRING	Gorai.005G133400.1	1e-80	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36243	2	2