PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1265
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 364aa    MW: 40435.7 Da    PI: 6.847
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1265genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.5e-323892155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 kprl+WtpeLH+rFveav+qLGG++kAtPk++++++++ gLtl+h+kSHLQkYRl
  Gh_D02G1265 38 KPRLKWTPELHQRFVEAVNQLGGPDKATPKNLMRVIGISGLTLYHLKSHLQKYRL 92
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.5223595IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-303694IPR009057Homeodomain-like
SuperFamilySSF466895.91E-163793IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-233893IPR006447Myb domain, plants
PfamPF002491.9E-84091IPR001005SANT/Myb domain
PfamPF143793.2E-23136182IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSFSFLLPPA CLSYTTQNLA LHNMQNQDMN LVLSTDAKPR LKWTPELHQR FVEAVNQLGG  60
PDKATPKNLM RVIGISGLTL YHLKSHLQKY RLGKSQQTEI CLSDNLDDYR EIQSGNKDLT  120
SDTSDGTHKL MNESSKIAQA LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVLKKAQ  180
ETLAGYTSSS VGVELAKAEL SQLVSMVNTG CTSSSLSELT EIGGSSLKQM ERKPMKGTIC  240
SRESSLTSSE SSGRTEDEEP PKNENICNRK SNTCFVFNFM EIYPEKKGLI SGSSNEVSGK  300
KRSGTNICDG ICVDQPVAKR LELPEEETGC GLRKSGLLGS FDLNNQYQND NESSPKAIDL  360
NCKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-213794158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-213794158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-213794158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-213794158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-213794158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-213794158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-213794158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-213794158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5789864e-55JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693409.10.0PREDICTED: two-component response regulator ORR23-like isoform X1
RefseqXP_016693410.10.0PREDICTED: two-component response regulator ORR23-like isoform X1
SwissprotF4I2749e-80PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A1U8JYN20.0A0A1U8JYN2_GOSHI; two-component response regulator ORR23-like isoform X1
STRINGGorai.005G141900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.26e-82G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]