PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G1268

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 357aa MW: 40377.8 Da PI: 7.8152

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G1268	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.5	2.2e-20	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+t+k Gh_D02G1268 10 KLENPNGRQATYTKRKHGIMKKANELSILCDVEIVLLMFSPTNK 53 5689999**********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-28	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.675	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-24	1	81	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.69E-24	2	81	No hit	No description
PRINTS	PR00404	3.8E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.9E-19	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MGRVKLKIKK LENPNGRQAT YTKRKHGIMK KANELSILCD VEIVLLMFSP TNKPSLCIGK 60 RSSLEEIIEK FAQLTPQERA KSRKLESLEA LKKTFKKLDH DVNIHEFLGS STQTIEDLTN 120 QARLLQTRLS EVHRRLSCWT NVDKINNVEQ LGQMEDSLKE YLNQIQSHKA CHFPKYVMTK 180 YYLTSLFLQF QNEMQVPYRM GLEQQLQTLS WLPNQDSRHI ALSDDPNLIP HRDVECSASS 240 SFGSYSGYFG TGKSSELSSS GQENSILNDL SGNGSLQLQL GGQCPLFSYN LNILNDPKFP 300 PVAEMNFNET PADYQVNGAL QGPRTGFDTT PGSWPSTSGS CAVTMFDEPL YTRLQQH

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MGRVKLKIKK LENPNGRQAT YTKRKHGIMK KANELSILCD VEIVLLMFSP TNKPSLCIGK  60
RSSLEEIIEK FAQLTPQERA KSRKLESLEA LKKTFKKLDH DVNIHEFLGS STQTIEDLTN  120
QARLLQTRLS EVHRRLSCWT NVDKINNVEQ LGQMEDSLKE YLNQIQSHKA CHFPKYVMTK  180
YYLTSLFLQF QNEMQVPYRM GLEQQLQTLS WLPNQDSRHI ALSDDPNLIP HRDVECSASS  240
SFGSYSGYFG TGKSSELSSS GQENSILNDL SGNGSLQLQL GGQCPLFSYN LNILNDPKFP  300
PVAEMNFNET PADYQVNGAL QGPRTGFDTT PGSWPSTSGS CAVTMFDEPL YTRLQQH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	6e-13	1	97	1	94	MEF2C
5f28_B	6e-13	1	97	1	94	MEF2C
5f28_C	6e-13	1	97	1	94	MEF2C
5f28_D	6e-13	1	97	1	94	MEF2C
6byy_A	5e-13	1	53	1	53	MEF2 CHIMERA
6byy_B	5e-13	1	53	1	53	MEF2 CHIMERA
6byy_C	5e-13	1	53	1	53	MEF2 CHIMERA
6byy_D	5e-13	1	53	1	53	MEF2 CHIMERA
6bz1_A	5e-13	1	53	1	53	MEF2 CHIMERA
6bz1_B	5e-13	1	53	1	53	MEF2 CHIMERA
6bz1_C	5e-13	1	53	1	53	MEF2 CHIMERA
6bz1_D	5e-13	1	53	1	53	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM236448	1e-172	HM236448.1 Gossypium hirsutum MADS32 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478705.1	0.0	PREDICTED: MADS-box transcription factor 25-like isoform X1
Swissprot	Q1PFA4	1e-110	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A0D2RLA9	0.0	A0A0D2RLA9_GOSRA; Uncharacterized protein
STRING	Gorai.005G142100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8754	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	2e-92	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]