PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G1270

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 286aa MW: 33131.4 Da PI: 8.8753

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G1270	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.7	1.4e-54	9	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yLk+++++k++++ ++i+evdiyk++Pw+Lp k++ +ekewyfFs+rd+ky++g r+nrat sgyWkatg+dk+++s +++ Gh_D02G1270 9 LPPGFRFHPTDEELITFYLKNQAKSKPCPV-SIIPEVDIYKFDPWQLPDKAEFGEKEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYS-GSK 104 79**************************.89***********99999*************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfykg+ pkg ktdW+mheyrl Gh_D02G1270 105 YVGVKKALVFYKGKPPKGLKTDWIMHEYRL 134 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-66	5	161	IPR003441	NAC domain
PROSITE profile	PS51005	61.205	9	161	IPR003441	NAC domain
Pfam	PF02365	4.3E-27	10	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
METKTSSDLP PGFRFHPTDE ELITFYLKNQ AKSKPCPVSI IPEVDIYKFD PWQLPDKAEF 60 GEKEWYFFSP RDRKYPNGVR PNRATVSGYW KATGTDKAIY SGSKYVGVKK ALVFYKGKPP 120 KGLKTDWIMH EYRLNDSRKQ ITKQNGSMRL DDWVLCRIYK KKNSGGRGLD QQVEESNTPI 180 HMTQCSNDAS ETQQMLKFPR TNSSVPQLLE LDYMGPISQL LGENTYNSSF DYFPNTIASN 240 TTGDHVEKLQ LQEIRYQYTD SGKLQVNENG FLNQQVYMNP MLYQFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-72	5	165	13	169	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-72	5	165	13	169	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-72	5	165	13	169	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-72	5	165	13	169	NO APICAL MERISTEM PROTEIN
3swm_A	6e-72	5	165	16	172	NAC domain-containing protein 19
3swm_B	6e-72	5	165	16	172	NAC domain-containing protein 19
3swm_C	6e-72	5	165	16	172	NAC domain-containing protein 19
3swm_D	6e-72	5	165	16	172	NAC domain-containing protein 19
3swp_A	6e-72	5	165	16	172	NAC domain-containing protein 19
3swp_B	6e-72	5	165	16	172	NAC domain-containing protein 19
3swp_C	6e-72	5	165	16	172	NAC domain-containing protein 19
3swp_D	6e-72	5	165	16	172	NAC domain-containing protein 19
4dul_A	5e-72	5	165	13	169	NAC domain-containing protein 19
4dul_B	5e-72	5	165	13	169	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19022	0.0	boll\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269\|PubMed:29760199}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP203895	0.0	KP203895.1 Gossypium hirsutum putative NAC transcription factor (SNAC1) mRNA, complete cds.
GenBank	KP300008	0.0	KP300008.1 Gossypium hirsutum cultivar CCRI10 NAP (NAP) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016693352.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	K4BNG7	1e-117	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A1U8JSV9	0.0	A0A1U8JSV9_GOSHI; NAC transcription factor 29-like
TrEMBL	A0A2P5QYI2	0.0	A0A2P5QYI2_GOSBA; Uncharacterized protein
STRING	Gorai.005G142300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7707	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-114	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]