PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1409
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 669aa    MW: 72622.7 Da    PI: 6.9146
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1409genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53e-28229282155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Gh_D02G1409 229 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 282
                  79*******************.********************************8 PP
2Response_reg77.16.3e-26451531109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++l+++l + +y +v+++ +++ al+ll+e++  +D+il D+ mp+mdG++ll++   e  +lp+i+++a g+   + + ++ Ga 
   Gh_D02G1409  45 VLVVDDDITCLKILEKMLHRCRY-HVTTCPQAKVALNLLRERKgcFDVILSDVYMPDMDGYKLLEHVGLEM-DLPVIMMSADGSTRAVMKGIRHGAC 139
                   89*********************.*******************************************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   Gh_D02G1409 140 DYLIKPIREEELKN 153
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.3E-16414657IPR017053Response regulator B-type, plant
SuperFamilySSF521721.08E-3542171IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.0E-4242180No hitNo description
SMARTSM004485.6E-3043155IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.17744159IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2245153IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.61E-2646158No hitNo description
PROSITE profilePS5129411.209226285IPR017930Myb domain
SuperFamilySSF466891.25E-19226286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-30226287IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-24229282IPR006447Myb domain, plants
PfamPF002499.7E-7231280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MATMHRVVQS SVSTSDATTT SYDGLTSCKA ADIVISDQFP AGLRVLVVDD DITCLKILEK  60
MLHRCRYHVT TCPQAKVALN LLRERKGCFD VILSDVYMPD MDGYKLLEHV GLEMDLPVIM  120
MSADGSTRAV MKGIRHGACD YLIKPIREEE LKNIWQHVVR KKWNENKELE HSGSLDDTDQ  180
HKQRHDDAEY ASSVNDATET SLKPLKKRSN SKEEDDGEID NDDPSTSKKP RVVWSVELHQ  240
QFVSAVNQLG IDKAVPKRIL ELMNVPGLTR ENVASHLQKF RLYLKRISGV AQQGGIANPL  300
CGPVEANVKI GSLGSFNIQA LAASGQIPPQ TLAAVHAELL GRSAGNLVVA TDQPALLQAT  360
PQGAKCIQVD QGVAFVQHSV KSESSSSKHF SQSFAPVEDV ASGFRSWPSN NIGTAGPSNS  420
GGLSSQNGNM LIDLLQQQQQ LQKPQQRSTV SELRRSINVQ PSCHVVPSQS SASFRAGNSP  480
VSVTQNGSYS RTAVIDYSLL SSQSNCPSLN IGQVSDVNLQ TTGVLSGYIP PASVSPSVSS  540
CSVNADNCAS QQVQTSSMTF KASRHLPGFV HSTSNIPDPY GSTKSGDLLN QEPFNNLGYI  600
NKGTCLPAKF AVDEFQSHLS SSSHGKVFSE NIGTRVKQEP SMEFGDNAKV GIPMLQQFRP  660
NDLMSVFTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22225288164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.24460.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478974.10.0PREDICTED: two-component response regulator-like APRR3
SwissprotA2XE311e-159ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A2P5RF460.0A0A2P5RF46_GOSBA; Two-component response regulator
STRINGGorai.005G156900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-122response regulator 2