PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G1769

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 275aa MW: 31039.6 Da PI: 9.9262

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G1769	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.5	1.9e-51	28	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++PwdLp e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk+v+s ++ Gh_D02G1769 28 LPPGFRFHPTDEELVVQYLRRKVLSWPLPA-SIIPEVDVCKADPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATLSGYWKATGIDKQVVSCsGN 121 79**************************.89***********54...46799******************************997578 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLvfy+g+ p+g++tdW+mheyrl Gh_D02G1769 122 QVVGMKKTLVFYRGKPPQGTRTDWIMHEYRL 152 88*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-60	22	185	IPR003441	NAC domain
PROSITE profile	PS51005	57.46	28	185	IPR003441	NAC domain
Pfam	PF02365	1.1E-26	29	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MVLSGLIGCL LLTMMEKLNF VKNGVLRLPP GFRFHPTDEE LVVQYLRRKV LSWPLPASII 60 PEVDVCKADP WDLPGDLEQE RYFFSTREAK YPNGNRSNRA TLSGYWKATG IDKQVVSCSG 120 NQVVGMKKTL VFYRGKPPQG TRTDWIMHEY RLVTADTCNA PHKKNQTQNH LVAVENWVLC 180 RIFLKKRSGA TNREDDGLQC CNEKGVGKAR RKSPVFYEFL SKERTDLNLA PASSSSCSSG 240 ITQQNAFWES TGKNKHRIVG NQHLHDPSSR KGVIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-52	26	189	18	172	NAC domain-containing protein 19
3swm_B	2e-52	26	189	18	172	NAC domain-containing protein 19
3swm_C	2e-52	26	189	18	172	NAC domain-containing protein 19
3swm_D	2e-52	26	189	18	172	NAC domain-containing protein 19
3swp_A	2e-52	26	189	18	172	NAC domain-containing protein 19
3swp_B	2e-52	26	189	18	172	NAC domain-containing protein 19
3swp_C	2e-52	26	189	18	172	NAC domain-containing protein 19
3swp_D	2e-52	26	189	18	172	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3574	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269\|PubMed:20388856}.
Uniprot	TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC110642	0.0	KC110642.1 Gossypium hirsutum NAC protein 7 (NAC7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313946.1	1e-173	NAC domain-containing protein 83-like
Swissprot	Q9FY93	1e-95	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2P5YIC2	0.0	A0A2P5YIC2_GOSBA; Uncharacterized protein
STRING	Gorai.005G195300.1	1e-170	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-97	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]