PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1900
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 178aa    MW: 19364.7 Da    PI: 6.6489
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1900genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.12.3e-05235336
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                 e+ C+ +   ++  +C++++  lC  C    H+ 
  Gh_D02G1900  2 EPLCDFCRGVRAVVYCKSDSARLCLRCDGCVHSA 35
                 689******99****************9998854 PP
2zf-B_box16.51.8e-054675433
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCllee 33
                   C++++++  +  C d +  lC+dC  ++
  Gh_D02G1900 46 LLCEKCNSQSSIVRCLDERLSLCQDCDWNG 75
                 57************************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-4147IPR000315B-box-type zinc finger
PROSITE profilePS501198.631147IPR000315B-box-type zinc finger
SMARTSM003364.54888IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEPLCDFCRG VRAVVYCKSD SARLCLRCDG CVHSANLLSC RHARSLLCEK CNSQSSIVRC  60
LDERLSLCQD CDWNGNGCLS LGHRREPLNC YTGCPSMAEF RRIWSSVLDA SSRGGFDTGL  120
SQPGNDDCFA NCSDQREQGA SFGSAGTKLS ELDSSSKLKP CMESSCLIST NANCIXLV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479808.11e-122PREDICTED: zinc finger protein CONSTANS-LIKE 12-like
SwissprotQ9LJ441e-39COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBLA0A0D2SKY31e-121A0A0D2SKY3_GOSRA; Uncharacterized protein
STRINGGorai.005G209100.11e-122(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-41B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]