PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G1925

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 257aa MW: 26652.9 Da PI: 10.1465

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G1925	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.4	1.3e-38	29	114	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s ++ns+s Gh_D02G1925 29 AVKKPPTKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGANSTSL 114 78**************************************************************99999777.33333333322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-33	35	118	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.287	35	89	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSNSETAATN GSLMDPQRHQ APAANGSLAV KKPPTKDRHS KVDGRGRRIR MPIICAARVF 60 QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TVSVSLRGAN STSLSSTTSS 120 SLDHKPLLGP TPFILGKRVR SDDDNAGKDD FGGLTVGPGV GSIVGPNGTH PGGFWALPAR 180 PDFGQLWSFA APPPPDMVVQ AAAQQPAAAA ALFVQQQQAM GEASAARVGN YLPGHLNLLA 240 SLSGAPGGSG RRDEDPH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9836	1e-146	boll\| ovule\| root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016691874.1	0.0	PREDICTED: transcription factor TCP21-like
Refseq	XP_016691875.1	0.0	PREDICTED: transcription factor TCP21-like
Refseq	XP_016691876.1	0.0	PREDICTED: transcription factor TCP21-like
Swissprot	Q9FMX2	4e-95	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1U8JNN4	0.0	A0A1U8JNN4_GOSHI; transcription factor TCP21-like
STRING	Gorai.005G211900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-68	TCP family protein