PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G1981

Common Name

XND1

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 195aa MW: 22444.9 Da PI: 4.7295

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G1981	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.6	3.4e-38	9	129	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++Pw+L+ k+ +e ++wy++s+r +nr t++gyWk g d++v+++ ++ Gh_D02G1981 9 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLDLYPYDPWELDGKALGEGNQWYYYSRRT--------QNRNTSKGYWKPMGIDEPVVNSnSS 97 79***********************999.99**********977778899**984........58999**********998678 PP NAM 98 elvglkktLvfykg.rapkgektdWvmheyrl 128 ++vg+kk +vfy g + p g+kt+W+m+eyrl Gh_D02G1981 98 KKVGMKKYFVFYIGeSGPAGVKTNWIMQEYRL 129 88******87588***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-48	7	162	IPR003441	NAC domain
PROSITE profile	PS51005	47.125	9	163	IPR003441	NAC domain
Pfam	PF02365	2.4E-23	10	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MGDNRNVNLP PGFRFYPTDE ELVVHFLQRK AALLPCHPDV IPDLDLYPYD PWELDGKALG 60 EGNQWYYYSR RTQNRNTSKG YWKPMGIDEP VVNSNSSKKV GMKKYFVFYI GESGPAGVKT 120 NWIMQEYRLS DSDSSSSSRS SKRRGGHSKI DYSKWVVCRV YERNCSEEED DGTELSCLDE 180 VFLSLDDLDE ISLPD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-41	6	169	17	174	NAC domain-containing protein 19
3swm_B	2e-41	6	169	17	174	NAC domain-containing protein 19
3swm_C	2e-41	6	169	17	174	NAC domain-containing protein 19
3swm_D	2e-41	6	169	17	174	NAC domain-containing protein 19
3swp_A	2e-41	6	169	17	174	NAC domain-containing protein 19
3swp_B	2e-41	6	169	17	174	NAC domain-containing protein 19
3swp_C	2e-41	6	169	17	174	NAC domain-containing protein 19
3swp_D	2e-41	6	169	17	174	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ801818	0.0	KJ801818.1 Gossypium hirsutum NAC transcription factor (XND1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479949.1	1e-144	PREDICTED: NAC transcription factor NAM-B2-like
Swissprot	Q8GWK6	4e-91	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0D2RJJ0	1e-142	A0A0D2RJJ0_GOSRA; Uncharacterized protein
TrEMBL	W6JF10	1e-142	W6JF10_GOSHI; NAC domain protein NAC61
STRING	Gorai.005G217400.1	1e-143	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-90	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]