PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G2025
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 275aa    MW: 29337.5 Da    PI: 7.7233
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G2025genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00032106128123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k F++   L  H  +H
  Gh_D02G2025 106 YKCSVCNKAFPSYQALGGHKASH 128
                  9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.0E-14106130IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-9106128No hitNo description
PROSITE profilePS5015710.325106133IPR007087Zinc finger, C2H2
SMARTSM003550.0057106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-9155182No hitNo description
PfamPF139126.0E-13159184IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432160182IPR007087Zinc finger, C2H2
SMARTSM003550.13160182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MALEALKSPT MATAPYSNKY EDIDNNYFDT WKKGKRSKRQ RDDESSSSPP PPPPPTNEEE  60
YLALCLIMLA RGGSTTENAV TDGGNDDHRL SSSSSAPAPA ALKLSYKCSV CNKAFPSYQA  120
LGGHKASHRK SSTDAKPDNQ SITTSSTTAS GEAGGNGKAH KCSICHKSFP TGQALGGHKR  180
CHYEGGNTTT TTTTTAAITN NKSSSVSLSG VTVSDGGALS QTRCVDFDFD LNLPALCELE  240
IKDGSRFCQI YTEQEVESPL PTKKPRFMTA SLAQH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.19990.0boll| embryo| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0026320.0HM002632.1 Gossypium hirsutum C2H2 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691618.11e-172PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A1U8JS721e-170A0A1U8JS72_GOSHI; zinc finger protein ZAT10-like
STRINGGorai.005G232300.11e-163(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-46salt tolerance zinc finger