PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G2079

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 406aa MW: 44271.1 Da PI: 9.5927

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G2079	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.7	3e-14	328	380	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L k+ ee+ ++ + Gh_D02G2079 328 RRQRRMIKNRESAARSRARKQAYTLELEAEVAKLKEMNQELLKKQEEMMEMQK 380 79****************************************99999988755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.6E-12	324	389	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.68	326	377	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-10	328	378	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.1E-13	328	378	No hit	No description
Pfam	PF00170	2.5E-12	328	380	IPR004827	Basic-leucine zipper domain
CDD	cd14707	9.12E-27	328	382	No hit	No description
PROSITE pattern	PS00036	0	331	346	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MEFIGQFDCG HNILLLWKMG SHLNFKNFGG DGNNGSKPVV NSPFVRQSSI YSLTFDELQS 60 TFGGLGKDFG SMNMDELLRN ISTAEETQSA MTASVSVGEG GDVSGGNLQK QGSLTLPRTL 120 SQKTVDEVWK YLMKESDGGS NDGSTGGEAN LPQRQQTLGT MTLEEFLARA GVVREDMQQI 180 GMVNNGGFFA DNSALALGFQ QANTNNGFAS GVKSSSQLQQ QPQPLFPKQQ VVAFAPPMHL 240 MNTTLLASPG AKGSVVGIGD PSMNNNLVQT TGLQGGGMGI VGLGSPASQI SSDVVSKNST 300 DTTSPSPVPY IFGRGRKWGA NLEKVVERRQ RRMIKNRESA ARSRARKQAY TLELEAEVAK 360 LKEMNQELLK KQEEMMEMQK NQMLEKVNRP WGRKRQCLRR TITCPW

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MEFIGQFDCG HNILLLWKMG SHLNFKNFGG DGNNGSKPVV NSPFVRQSSI YSLTFDELQS  60
TFGGLGKDFG SMNMDELLRN ISTAEETQSA MTASVSVGEG GDVSGGNLQK QGSLTLPRTL  120
SQKTVDEVWK YLMKESDGGS NDGSTGGEAN LPQRQQTLGT MTLEEFLARA GVVREDMQQI  180
GMVNNGGFFA DNSALALGFQ QANTNNGFAS GVKSSSQLQQ QPQPLFPKQQ VVAFAPPMHL  240
MNTTLLASPG AKGSVVGIGD PSMNNNLVQT TGLQGGGMGI VGLGSPASQI SSDVVSKNST  300
DTTSPSPVPY IFGRGRKWGA NLEKVVERRQ RRMIKNRESA ARSRARKQAY TLELEAEVAK  360
LKEMNQELLK KQEEMMEMQK NQMLEKVNRP WGRKRQCLRR TITCPW

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269\|PubMed:11884679}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:16284313}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016691681.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
Swissprot	Q9M7Q3	1e-118	AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBL	A0A1U8JN26	0.0	A0A1U8JN26_GOSHI; ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
STRING	Gorai.005G237400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34000.2	2e-74	abscisic acid responsive elements-binding factor 3

Publications ? help Back to Top
Zhao Q, et al. Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling. Mol. Biol. Rep., 2018. [PMID:24078097] Bao Y, et al. The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis. New Phytol., 2014. 202(1): p. 174-87 [PMID:24350984] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Xie M, et al. AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis. Plant Physiol. Biochem., 2014. 77: p. 73-83 [PMID:24561249] Kim EY,Seo YS,Park KY,Kim SJ,Kim WT Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants. Gene, 2014. 552(1): p. 146-54 [PMID:25234727] Zhang H, et al. The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis. Plant Cell, 2015. 27(1): p. 214-27 [PMID:25616872] Baek D, et al. A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. Mol. Cells, 2016. 39(2): p. 111-8 [PMID:26674968] Bao Y, et al. Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis. PLoS ONE, 2016. 11(2): p. e0148572 [PMID:26849212] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Li X, et al. Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis. Front Plant Sci, 2016. 7: p. 1075 [PMID:27486475] Wang Z, et al. Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa. Plant Physiol. Biochem., 2016. 109: p. 199-208 [PMID:27721135] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Kerr TCC, et al. Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum). Plant Cell Environ., 2018. 41(5): p. 898-907 [PMID:28098349] Lyzenga WJ,Sullivan V,Liu H,Stone SL The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG). Front Plant Sci, 2017. 8: p. 502 [PMID:28443108] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Kim HJ, et al. Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean. Mol. Cells, 2018. 41(5): p. 413-422 [PMID:29754472]