PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G2121
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 128aa    MW: 14714.1 Da    PI: 10.0761
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G2121genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-1618109394
                  EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  k+lt  dv+ +  +++p   ++eh    +g+  +s + +++d+ +++W+++l  rk++g+   vltkGW +Fvk  gLk+gD v+F ++g+++ +  +
  Gh_D02G2121  18 KILTATDVGVR--FSFPTATMREHfkllEGS--QSLDFQVMDKYSKVWTFRLYTRKNDGHpkPVLTKGWLDFVKRMGLKVGDKVIFVVHGNHNDH--L 109
                  66777777765..7***********977555..7889***************6688888899*************************98886663..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-2113115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-161599No hitNo description
SMARTSM010196.8E-1016115IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-1916116IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-1318107IPR003340B3 DNA binding domain
PROSITE profilePS508639.98253115IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MHMQSSESEP GMKELCSKIL TATDVGVRFS FPTATMREHF KLLEGSQSLD FQVMDKYSKV  60
WTFRLYTRKN DGHPKPVLTK GWLDFVKRMG LKVGDKVIFV VHGNHNDHLG ILVKRNIKLL  120
GSEHWADL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098840401e-113
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481135.13e-91PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A2P5R5857e-90A0A2P5R585_GOSBA; Uncharacterized protein
STRINGGorai.005G241200.19e-88(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17815410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.17e-08VP1/ABI3-like 3