PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G2283

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 281aa MW: 32612.3 Da PI: 8.3414

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G2283	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.9	6.1e-47	18	144	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPt+eel+ +yLk+ + +kkl+ ++i +iy+++PwdLp k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++++s ++ Gh_D02G2283 18 PGFRFHPTEEELLEFYLKNMIYDKKLRY-DIIGYHNIYHHDPWDLPGLSKIGEREWYFFVPRDRKHGSGGRPNRTTANGFWKATGSDRKIVSLsdPKR 114 9************************9.99***********8778899*********************************99766677 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfykgrap+g ktdWvm+eyrl Gh_D02G2283 115 IIGLKKTLVFYKGRAPRGCKTDWVMNEYRL 144 8*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.427	16	162	IPR003441	NAC domain
SuperFamily	SSF101941	2.48E-56	17	162	IPR003441	NAC domain
Pfam	PF02365	3.1E-25	18	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSSQSSMDDN ATPKIELPGF RFHPTEEELL EFYLKNMIYD KKLRYDIIGY HNIYHHDPWD 60 LPGLSKIGER EWYFFVPRDR KHGSGGRPNR TTANGFWKAT GSDRKIVSLS DPKRIIGLKK 120 TLVFYKGRAP RGCKTDWVMN EYRLPDGCSL PKDVVLCKVY RKATSLKVLE QRAAMEEELK 180 AIKNTSPSSP LSSMETISFC SPKEAQVPAP QMFCKKENEE EQEQETMVEK NRCLQLPLGS 240 EKLPELQMPK VLSDWTQDQF WTQLNSPWFQ NLTTYANILN F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-46	18	162	17	168	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3343	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847197	0.0	KC847197.1 Gossypium hirsutum NAC domain protein NAC20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016691337.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	Q10S65	5e-95	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1U8JM27	0.0	A0A1U8JM27_GOSHI; NAC transcription factor 29-like
STRING	Gorai.005G257800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-119	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]