PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G2343
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 104aa    MW: 12215.7 Da    PI: 9.5006
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G2343genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12e-1030963398
                 -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
           B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98
                  + l++ de+   W++ ++++++ gr++ +  W++F ++n++++gD+v ++++ g+  ++ +++ ++r
  Gh_D02G2343 30 ARSLMVIDERRYPWTFGYRITRR-GRVLSGFHWQNFIRDNNVRVGDTVSIERNdGHdYQAPYKIEIIR 96
                 4569**************65444.46788899*******************76444455556666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.418198IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-9485IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-82884IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MALLQKTVEQ LDLRELTVTA AYDTEPFPNA RSLMVIDERR YPWTFGYRIT RRGRVLSGFH  60
WQNFIRDNNV RVGDTVSIER NDGHDYQAPY KIEIIRNPRN SSGT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632671.12e-46PREDICTED: uncharacterized protein LOC108475196
TrEMBLA0A0D2NII92e-49A0A0D2NII9_GOSRA; Uncharacterized protein
STRINGGorai.005G264300.13e-50(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1973623