PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G2344
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 100aa    MW: 11832.3 Da    PI: 8.7309
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G2344genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.9e-1031843488
                 SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3 34 ktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88
                   lt+ de+   W++ +  r ++++ ++ ++ W++F ++n++++gD+v +++++r+
  Gh_D02G2344 31 SNLTVIDERLCPWTFDY--RVSRRGrVLSGSHWQGFIRQNHVQVGDTVSIERNDRH 84
                 36999************..444444388899********************77553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.586198IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-8483IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-73086IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-73196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MALLQKTVEQ LDLQQLTVTE AYDTEPFPNA SNLTVIDERL CPWTFDYRVS RRGRVLSGSH  60
WQGFIRQNHV QVGDTVSIER NDRHCYRAPY KIEIIRNRRN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632671.17e-42PREDICTED: uncharacterized protein LOC108475196
TrEMBLA0A0D2NII93e-48A0A0D2NII9_GOSRA; Uncharacterized protein
STRINGGorai.005G264300.16e-49(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1973623