PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G2404
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 221aa    MW: 25407.2 Da    PI: 8.3936
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G2404genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.39.6e-2756144290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  fY+eYA++vGF +r+ + ++s+r+g+i  r++ C+keg+  + + k    r++r++tr gCka++++k +k+gkw++t++++eHnH+l+
  Gh_D02G2404  56 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHIKFNKSGKWVITRFVKEHNHPLV 144
                  9**************************************99999998****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-2456144IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNNVPCLCVA VDLDEGAEAI ESFTGGEILA FPCEADSIVE PHEGMEFESE DAAKIFYDEY  60
ARRVGFVMRV MSCRRSERDG RILARRLGCN KEGYCVSIRG KFGPVRKPRP STREGCKAMI  120
HIKFNKSGKW VITRFVKEHN HPLVVAPREA RQTMDEKDKK IQELTVELRN KKRLCAAYQE  180
QLTAFMKIVE EHSNQLSKKV QNVVNNLKEY ESIEPQLLQQ R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.234081e-171boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691045.11e-164PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2P5PVG51e-163A0A2P5PVG5_GOSBA; Uncharacterized protein
STRINGGorai.005G128700.11e-155(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39182855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-115FAR1 family protein