PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0014
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 246aa    MW: 28021.3 Da    PI: 5.9886
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0014genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-2095155257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  r+R+t+t+ ql++Le+ F + + +ps+++++e++++l     ++e++V++WFqNrRa+ k+
  Gh_D03G0014  95 RQRWTPTAVQLQILERIFDEgTGTPSKQKIKEITSELsqhgPISETNVYNWFQNRRARSKR 155
                  89*****************99******************999*****************97 PP
2Wus_type_Homeobox100.31.4e-3294157265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPt+ Q++iLe+++++G+ tP+k++i++it+eL+++G i+++NV++WFQNr+aR+++kq
        Gh_D03G0014  94 ARQRWTPTAVQLQILERIFDEGTGTPSKQKIKEITSELSQHGPISETNVYNWFQNRRARSKRKQ 157
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-1789159IPR009057Homeodomain-like
PROSITE profilePS5007114.64191156IPR001356Homeobox domain
SMARTSM003891.7E-1493160IPR001356Homeobox domain
SuperFamilySSF466891.45E-1794157IPR009057Homeodomain-like
PfamPF000463.5E-1895155IPR001356Homeobox domain
CDDcd000864.26E-1395157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMIMEWDQQQ ENQSQNQRED SVNLNVNNGV MYVKVMTDEQ LETLRKQIAV YASICEQLVE  60
MHKNLTAQQD LTGGRLGNLY CDPLMTSGGH KISARQRWTP TAVQLQILER IFDEGTGTPS  120
KQKIKEITSE LSQHGPISET NVYNWFQNRR ARSKRKQVMV ASSSNNNNNH NHAGESEVET  180
EVESPRTKPE NLLLVSEGQG QHHDVCFQNP EITSQLHFLG VGDDHMCQLK EWGEAAFMTK  240
HGRVSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.155160.0root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098392730.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016726319.10.0PREDICTED: WUSCHEL-related homeobox 13-like
SwissprotO817884e-84WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A1U8ML490.0A0A1U8ML49_GOSHI; WUSCHEL-related homeobox 13-like
STRINGGorai.003G002200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-84WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]