PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G0025

Common Name

SPL12

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 177aa MW: 20594.9 Da PI: 8.0609

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G0025	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	122.8	1.5e-38	65	140	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+++C adl++ak+yhrrhkvCe h+k + vlv+g++qrfCqqCsrfhe+s+fD +krsCr+rLa+hn rrrk Gh_D03G0025 65 CQADECGADLKDAKQYHRRHKVCEPHAKDAFVLVKGIRQRFCQQCSRFHEISKFDGTKRSCRDRLAGHNLRRRKVV 140 *************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	29.299	62	139	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	2.6E-31	65	126	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.0E-31	65	138	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-34	65	141	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MEMAKRACKT TVNWVDDDDD EEEEEEQREE RMVKIRVVPR ERYERMNTFI HYSNSAAISG 60 GGGGCQADEC GADLKDAKQY HRRHKVCEPH AKDAFVLVKG IRQRFCQQCS RFHEISKFDG 120 TKRSCRDRLA GHNLRRRKVV QSDQEAENDN SNNKNKASYG KGTATPMLQQ WYQEFTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-31	59	138	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.15726	1e-178	ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622320	0.0	KJ622320.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016726301.1	1e-132	PREDICTED: squamosa promoter-binding-like protein 3
Swissprot	Q6Z461	5e-33	SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBL	A0A088DKZ4	1e-131	A0A088DKZ4_GOSHI; SQUAMOSA promoter binding-like transcription factor
STRING	Gorai.003G003200.1	1e-111	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22067	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	3e-33	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Zhang X, et al. Genomic organization, differential expression, and functional analysis of the SPL gene family in Gossypium hirsutum. Mol. Genet. Genomics, 2015. 290(1): p. 115-26 [PMID:25159110]