PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0032
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 227aa    MW: 26316.8 Da    PI: 7.5853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0032genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.62.6e-45111402128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlsk.. 95 
                   pGfrFhPt+eelv++yLk+ v gk+l + ++i  ++iy++ PwdLp  ++k +e+ewyfF++rd+++ + gk++nr+t++gyWkatg+d+++ +   
  Gh_D03G0032  11 LPGFRFHPTEEELVNYYLKETVLGKNLYC-DIIGFLNIYNHYPWDLPaGMAKIGEREWYFFVQRDTRSGHgGKKPNRTTERGYWKATGSDRQIRRLte 107
                  69************************999.99***************557777999*********9999758899******************98744 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +  +gl+ktLvfy+g+ap+g++tdWvm+eyrl
  Gh_D03G0032 108 PKIIMGLRKTLVFYTGKAPNGNRTDWVMNEYRL 140
                  55569**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5010158IPR003441NAC domain
PROSITE profilePS5100551.91510158IPR003441NAC domain
PfamPF023656.6E-2612140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MENIISPEII LPGFRFHPTE EELVNYYLKE TVLGKNLYCD IIGFLNIYNH YPWDLPAGMA  60
KIGEREWYFF VQRDTRSGHG GKKPNRTTER GYWKATGSDR QIRRLTEPKI IMGLRKTLVF  120
YTGKAPNGNR TDWVMNEYRL SDTSILREDI VLCKIYRKAT SLRVFELRAE EQALSSYVAQ  180
NNNITVPLPL QHHDYGTNMA QADSDEHGPS SYSAWTTMTE CFTQYGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-391215817168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.68960.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO310724450.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472520.0KC847252.1 Gossypium hirsutum NAC domain protein NAC75 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314340.11e-169protein CUP-SHAPED COTYLEDON 1-like
RefseqXP_012469248.11e-169PREDICTED: protein CUP-SHAPED COTYLEDON 1-like isoform X2
SwissprotQ10S652e-74NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A1U8MKZ31e-168A0A1U8MKZ3_GOSHI; protein CUP-SHAPED COTYLEDON 1-like
STRINGGorai.003G003900.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.18e-80NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]