PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0104
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 1273aa    MW: 140235 Da    PI: 5.2517
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0104genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-0612501273226
                   -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                   +++ C+ f+++G+C++G++C++ H+
  Gh_D03G0104 1250 GQRVCK-FYESGYCNRGASCSYWHP 1273
                   6799**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.4E-8106165IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.15E-7108164IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.618110176IPR019787Zinc finger, PHD-finger
CDDcd155681.17E-18112157No hitNo description
SMARTSM002496.3E-7112158IPR001965Zinc finger, PHD-type
PROSITE patternPS013590113173IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5136026.595360493IPR004343Plus-3 domain
SMARTSM007195.5E-45360469IPR004343Plus-3 domain
SuperFamilySSF1590423.27E-31361490IPR004343Plus-3 domain
PfamPF031263.3E-22365466IPR004343Plus-3 domain
SuperFamilySSF552778.63E-16558614IPR003169GYF domain
CDDcd000722.84E-16561618No hitNo description
PROSITE profilePS5082914.056561615IPR003169GYF domain
SMARTSM004442.1E-18562617IPR003169GYF domain
PfamPF022132.7E-12563607IPR003169GYF domain
Gene3DG3DSA:3.30.1490.402.5E-17563614IPR003169GYF domain
SuperFamilySSF902293.92E-612481272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2212481273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1273 aa     Download sequence    Send to blast
MENCQQVESG TALCKRGGGG GDAENNSDGL NRGVELMNVD HCRKVPLTED SNLVDVAVRG  60
DGGGMGEVKL GNGVKVVEMK RRRGRPPKNP ARNMSSSAPA PVTVRKKDEE DVCFICFDGG  120
SLVLCDRHGC PKAYHPACIK RDEAFFRSKA KWNCGWHICS TCQKSSYYMC YTCTYSLCKN  180
CTKGADYVNV RGNKGFCGLC LRTIMLIENS TSGNKEMVQV DFDDKTSWEY LFKMYWVFLK  240
EKLSLTLDEL TKAKNPWKEN AIMEKPFGDL GASFSKKRKM LKQQAFFNKV ESVEAEKPGI  300
AKNHLRPTDI ISKRSEAVAT QMAVLGNSDG PPIIAIDTRC KTHEKVDEKG QKANPDEFAA  360
IDVHNMNLIY LRRSLMENLI DDVEKFNDKV VGSFVRIRIP CDQKQDIYRL VQVVGTIKAA  420
EPYKIGEKTI DVMIEILNLD KKEVVSINGI SNQELSEDEC QQLRQSIIKS GQIKWFTVGE  480
ILEKAMALQA VRVNDVSSLT SEECEEKLQL LNSPDERHRR LHEIPDIHRD PNRNLFSDEA  540
SGELDEKKKG MELSVNSIEA DKIWHYQDPL GKIQGPFAMA MLRGWSSSGH FPPELRVRRV  600
SEKQENSILL TDALVGQYSQ LQQLVQHSRM PTEDASMATE DGCRNRDEDA RESKDQKVNQ  660
MESKHPEGSL NLMQNDTSGH CQNNDSAKSK ELGSQSSTCT APVDIVSSNA AETGNSVPHW  720
DSMKGDNYFP GQPQLSSSLP ASTISEKPCE TQSDQVSKGH GVERWDCGSI DMNLNLNKTS  780
EGQIIDGNVK QDDNDGKSVK PSGQCWRAPP LNDGSNGWNS NSGLLYLARA LEVSELNQDI  840
DFPDLPTSTS KLNHEDSKGQ DTKNKQSLSS NVPQLDSGPT WSTASSLVGN GPQLPEVAGE  900
WGGYSSNSTR PSPGEWNPDL VPKSSIKPTD LGSDHAATPT SGSGQLTHSS PTDPPNNESG  960
WDSIVPEPNE YSLGDESVSD LLAEVEAMES LNGLASPTSI LRCDGDLAQG SEPDCFSPVG  1020
GLSPAPDPGK SDALSSTNDL QMPSLAALTN ELFGISTSEV LDAQKSSGGH SSTSAEMDED  1080
TRPSDVSVNQ FEARSDMQPP AQPVTTWGMT TVGSPWRPGP ETTGTNWGAV HGNTSFHWDD  1140
LGQETTNLSW GTGHGTIQEN RSSIHSGTSA TNPAYFGNQQ RYVDTRDQQR YVDPRDQQRY  1200
VDPRDQQRYV DTRDRDFHSR GRSSWNRHSS YGGGGPPPNR VGSFRPPPKG QRVCKFYESG  1260
YCNRGASCSY WHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A2e-13103185887Histone-lysine N-methyltransferase NSD3
4gnd_C2e-13103185887Histone-lysine N-methyltransferase NSD3
4gne_A2e-13103185887Histone-lysine N-methyltransferase NSD3
4gnf_A2e-13103185887Histone-lysine N-methyltransferase NSD3
4gng_A2e-13103185887Histone-lysine N-methyltransferase NSD3
4gng_D2e-13103185887Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.230510.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6144471e-101JX614447.1 Gossypium hirsutum clone NBRI_GE57824 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692431.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A1U8JQ790.0A0A1U8JQ79_GOSHI; zinc finger CCCH domain-containing protein 44-like
STRINGGorai.003G011400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1764523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.15e-99DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding