PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0160
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 533aa    MW: 60612.9 Da    PI: 6.6572
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0160genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.37.2e-941735322374
         GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  +e L+++A+++++++l+laq +Larl ++ +sp+g+p+qR+a+yf+eAL + l++   +l    +++ +s+++ +++++a+k+fs + Pi+ fsh+t+
  Gh_D03G0160 173 IEELVRAADCFDTQELQLAQVILARLGQRlRSPSGKPLQRAAFYFKEALLSLLTG---GLT--RTTRLSSWNDIVQTIKAYKAFSGINPIPMFSHFTT 265
                  678*************************99*************************...444..4667777789************************* PP

         GRAS  99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  Nqa++eav       +HiiDfdi+ G+Q+++L++++ +R  ++   +R+T+v+++e   + e++ ++++L +fA+el+++f++++++ +++e+l++++
  Gh_D03G0160 266 NQALMEAVLDGssPLIHIIDFDIGFGGQYASLMREMFERHdHSRKFIRVTAVVPEE--YAIETRLIKDNLVQFASELKLRFQIEFVLLRTFEMLSFKS 361
                  *******854436889************************556669********66..99999*********************************** PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  +++  gE++a+ l+  ++r l   ++l    +++L+ +++++P++vv+v++e  ++ +++sF + f++ le+y+++f+sl+a +  + e+ +kvE  l
  Gh_D03G0160 362 FKFIDGEKTAILLSPLIFRSL--GLNL----TAFLNDLRRVNPTIVVFVDNEvwMESGTPSFRKNFVNGLEFYAMMFESLDAAVVGNGEWVRKVETLL 453
                  ***************999999..4444....56*******************76677999************************9999********** PP

         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  l+++i  +v ++ ++      t+  Wrer++ aG+++v+ls+ a+ qa++ll kv+++g++v +++ +lvl+W + +Lv++SaWr
  Gh_D03G0160 454 LRPRILAAVETAARS------TAPPWRERFRGAGMRAVHLSQLAEFQAECLLGKVQVRGFHVAKRQTELVLCWYESALVATSAWR 532
                  *********999887......99*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.053146512IPR005202Transcription factor GRAS
PfamPF035142.5E-91173532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MRVPVSSPQS NHCQSPKPNN NSNTSSTRNI SFHGATINSV STSCYEPTSV LELRRSPSPG  60
HDNPVDHHQH QQQQQQHQAP LEWDEHVLRN MDWDSIMKDL GLDDESVPSI KTIPPQENHI  120
QNLPEFTSCE LTHPTEFNNL YDFYPSHNID ISNTTTYGFN NMGNFINSGF DFIEELVRAA  180
DCFDTQELQL AQVILARLGQ RLRSPSGKPL QRAAFYFKEA LLSLLTGGLT RTTRLSSWND  240
IVQTIKAYKA FSGINPIPMF SHFTTNQALM EAVLDGSSPL IHIIDFDIGF GGQYASLMRE  300
MFERHDHSRK FIRVTAVVPE EYAIETRLIK DNLVQFASEL KLRFQIEFVL LRTFEMLSFK  360
SFKFIDGEKT AILLSPLIFR SLGLNLTAFL NDLRRVNPTI VVFVDNEVWM ESGTPSFRKN  420
FVNGLEFYAM MFESLDAAVV GNGEWVRKVE TLLLRPRILA AVETAARSTA PPWRERFRGA  480
GMRAVHLSQL AEFQAECLLG KVQVRGFHVA KRQTELVLCW YESALVATSA WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-2417853124377Protein SCARECROW
5b3h_D2e-2417853124377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692356.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1U8JQ080.0A0A1U8JQ08_GOSHI; scarecrow-like protein 15
STRINGGorai.003G016500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-168GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]