PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0184
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 216aa    MW: 23977.6 Da    PI: 10.333
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0184genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-112751896
                 --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 +p++f+ee g+ k +  +++++ +s   W +    + +s++++l+ GW++F ++n++  gD+++F+++ +++   +v+v
  Gh_D03G0184  2 IPRSFTEEAGLGKVS--MVMIKGPS-GMWPMMT--TFSSKQVLLSVGWSKFLHENEIVIGDTLLFEHVPNTGHLIHVQV 75
                 9********888655..45555555.57*****..999999*************************9876666566665 PP
2B347.82.6e-151171971699
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++ +k fa+e ++ +e s   +++d++gr+We+++ ++ ks  + l++GW++Fv +n+L++gD++ F+++ +++   ++k+++k
  Gh_D03G0184 117 VCSSKFFAKETSLAEEPS--KVIKDSDGRKWELNILVDAKS-NVRLGAGWSQFVLENRLEAGDTISFQHMPHTGNVIHFKIISK 197
                  343556677776665443..4558***********877777.579***********************9977888788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.702179IPR003340B3 DNA binding domain
CDDcd100173.34E-10275No hitNo description
Gene3DG3DSA:2.40.330.101.0E-10278IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.037279IPR003340B3 DNA binding domain
PfamPF023621.4E-8272IPR003340B3 DNA binding domain
SuperFamilySSF1019361.41E-11274IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.111102198IPR003340B3 DNA binding domain
SMARTSM010190.0013105198IPR003340B3 DNA binding domain
PfamPF023621.7E-12113197IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-12121194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-11121187IPR015300DNA-binding pseudobarrel domain
CDDcd100177.89E-12123196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
GIPRSFTEEA GLGKVSMVMI KGPSGMWPMM TTFSSKQVLL SVGWSKFLHE NEIVIGDTLL  60
FEHVPNTGHL IHVQVANKDG TGNCGSLAGK RPRDRPREQT ELPPSTKYAS SSKRTKVCSS  120
KFFAKETSLA EEPSKVIKDS DGRKWELNIL VDAKSNVRLG AGWSQFVLEN RLEAGDTISF  180
QHMPHTGNVI HFKIISKARA ANMVMEETRE KKPVKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690955.11e-160PREDICTED: B3 domain-containing protein REM13-like isoform X1
TrEMBLA0A1U8JKY91e-159A0A1U8JKY9_GOSHI; B3 domain-containing protein REM13-like isoform X1
STRINGGorai.003G020700.14e-76(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.23e-09B3 family protein