PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0185
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 367aa    MW: 41826.1 Da    PI: 6.5341
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0185genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.71.1e-32239294156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+peLH+rFvea+++LGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Gh_D03G0185 239 KQRRCWSPELHKRFVEALQKLGGSKVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 294
                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.212236296IPR017930Myb domain
SuperFamilySSF466893.15E-18237297IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28238297IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-27239294IPR006447Myb domain, plants
PfamPF002495.6E-9241292IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MLEKKREREK KRIMELNMDV DLVYVPETVS EFLKQASKIK NGFQRLCKIS DYVRRLEDEM  60
KKIDAFKREL PLCMLLLKDV IKRLKEEEMM CKEPGDGSVT IDEGNGKVNK ENDGGAGNKR  120
NWLSTVQLWN SDSDNVDQSK KPNKVPGLKL GSEEEEEEEE EDMFEDPIEF FNNKRFKGQM  180
DKENLELSLM TPSFDLGSSS PSHNPILKIN DNCKTGFGSD QNQTKFQTKH QQDMQNCKKQ  240
RRCWSPELHK RFVEALQKLG GSKVATPKQI RELMQVDGLT NDEVKSHLQK YRLHFRKVAS  300
DSSAQNQCNE KMKANISESD SPQGPLRAGG WAKGLSSGGS VVEGEDDEKS DGRSWRSGGT  360
KTGEIEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-14239292154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-14239292154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-14239292154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-14239292154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.255970.0ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8377000.0JQ837700.1 Gossypium hirsutum cultivar ZM3 MYB mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469518.10.0PREDICTED: probable transcription factor KAN3
TrEMBLA0A1U8JU660.0A0A1U8JU66_GOSHI; uncharacterized protein LOC107909337
STRINGGorai.003G021300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.18e-54G2-like family protein