PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0304
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 324aa    MW: 36620.3 Da    PI: 5.678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0304genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12146192455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ ++f  L  l+P +     kK +Ka++L  A++Y+k+Lq
  Gh_D03G0304 146 DHVIAERKRREKLSQRFISLSALIPGL-----KKTDKASVLGDAIKYMKQLQ 192
                  6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16146204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-12147196No hitNo description
SuperFamilySSF474596.02E-16147205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-15148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEIISNKWIS EVEMVEDPTF FPQFTIPNMD YSFDDTNFQS FSSESYSSYP NINNGSSNIQ  60
AFHQGVDDNE FKRPMKQLKT DNNWNFSINE NIPPPPPPPK ASSSSSPSSH IISFHNSNPS  120
PAVSQQYYEI TKKVGSTTRT PLHAQDHVIA ERKRREKLSQ RFISLSALIP GLKKTDKASV  180
LGDAIKYMKQ LQEEVATLEE QAAKKATESV ILVKKSQIYA DDETSSSDEN FDSNQTNNKL  240
FPEIEARVSD KDVLIRIHCE KNKGFISNIM NEVEKLHLCV LNTNVLPFGQ ATLDITIVAQ  300
MEAEFSMTVK DLVKSLRLAL LKFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155ERKRRE
2151156RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6152070.0JX615207.1 Gossypium hirsutum clone NBRI_GE59073 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740851.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1U8NPE10.0A0A1U8NPE1_GOSHI; transcription factor bHLH18-like
STRINGGorai.003G034600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-66bHLH family protein