PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0342
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 333aa    MW: 37330.8 Da    PI: 6.9191
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0342genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.6e-21151201256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Gh_D03G0342 151 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 201
                  59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-34150210No hitNo description
SuperFamilySSF541711.37E-23151209IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-32151209IPR001471AP2/ERF domain
PROSITE profilePS5103223.235151208IPR001471AP2/ERF domain
SMARTSM003802.3E-38151214IPR001471AP2/ERF domain
PRINTSPR003673.1E-11152163IPR001471AP2/ERF domain
PfamPF008471.6E-14152201IPR001471AP2/ERF domain
PRINTSPR003673.1E-11174190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAAVIDMYNS SRNSAFYDPL REELMKALEP FMKSASSSSS PLQPNLYPEY CSPLNSSTHL  60
FSNHGFSNYN KNMLGFEQTG SSLGLNQLTR SQILQIQSQI LHQQQQQQVA SMAAVATPPT  120
TTFENPRVGF LSPKPVPMKH VSSTPPKAAK LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT  180
FDTAEEAALA YDKAAYKLRG EFARLNFPHL KHQGAHVFGE FGDYKPLHAS VDAKLQAICQ  240
SLQAQGNPVK TKTLPKAAEF HYPIKTEEFD HKQDNSSSSS SSSVDESSLA GSLSSPESDI  300
TFFDFSDSKW EDNEIENFSL DKFPSLEIDW EAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21150208160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.38460.0boll| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5275460.0HQ527546.1 Gossypium herbaceum clone NBRI_C2_1470 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740805.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
TrEMBLA0A1U8NPP10.0A0A1U8NPP1_GOSHI; ethylene-responsive transcription factor ERF060-like
STRINGGorai.003G038200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-61ERF family protein