PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0444
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 215aa    MW: 24805 Da    PI: 8.7207
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0444genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32138196159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Gh_D03G0444 138 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 196
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-34123197IPR003657WRKY domain
SuperFamilySSF1182906.02E-29130197IPR003657WRKY domain
PROSITE profilePS5081129.585133198IPR003657WRKY domain
SMARTSM007744.0E-37138197IPR003657WRKY domain
PfamPF031061.7E-25139195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSQQAMLNQE LFEEKEMSQM GFFTFPQTLT SYPPPFGCLK AFNIAPPPAN LTETLFSHPK  60
HREEDSASDF AGPQLLSLHS STPNLWAWGE VNECLGTKKS SGDDHLGVSA MKMKRIKGRR  120
KVREPRFCFK TMSDVDVLDD GYKWRKYGQK VVKNTQHPRS YYRCTQDNCR VKKRVERLAE  180
DPRMVITTYE GRHAHSPAQD SEDSHHPHSH LNNFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-27129195874Probable WRKY transcription factor 4
2lex_A8e-27129195874Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.158900.0boll
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698070.0KF669807.1 Gossypium hirsutum WRKY transcription factor 21 (WRKY21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469929.11e-162PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB74e-57WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A1U8NSC01e-163A0A1U8NSC0_GOSHI; probable WRKY transcription factor 13
STRINGGorai.003G048100.11e-161(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-59WRKY DNA-binding protein 13