PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0460
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 347aa    MW: 39338.5 Da    PI: 9.1718
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0460genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.21.4e-153073144
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 k+i  +  r  t+ kR++g++KKA+E S+LC++e +vi+++++ 
  Gh_D03G0460 30 KFIMKDKVRILTYEKRKKGLIKKAQEFSILCGVETCVILYAPKS 73
                 57777888999*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.042274IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-152285IPR002100Transcription factor, MADS-box
CDDcd002665.51E-2123108No hitNo description
SuperFamilySSF554559.16E-2023116IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-92444IPR002100Transcription factor, MADS-box
PfamPF003194.4E-143274IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-94459IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-95980IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGYFLKRLEI TTIILVMRIL EMGRGKLNMK FIMKDKVRIL TYEKRKKGLI KKAQEFSILC  60
GVETCVILYA PKSKETPAKL EIWPSDHAKV MHVIDKYKGK PLHVRERKCF NVLDFYAIRR  120
KKLDDEICKL RKANTEAKFS VWDDRINSFS VNQLSALLSS LDSNLESART MIKMIKGKHQ  180
SLIEDSTENQ LNQPSLDLYN QAQLSLFQRA SDMEITKQQQ PMFTVSSSCQ PFSSNEPLQW  240
QSVNMNPIDT SMAMVSTNGT LDFTQADGEC SSSTTYSSLT PQTCYDPTTS MVGNVVLSNS  300
WGVPVCFYGQ LMPPMTPFAS PTMLSFPSQA GELDRNVGDQ VRSINKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13346KDKVRILTYEKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740267.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A1U8NMP10.0A0A1U8NMP1_GOSHI; agamous-like MADS-box protein AGL82
STRINGGorai.003G049800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2482522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-21AGAMOUS-like 82