PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0519
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 190aa    MW: 20688.2 Da    PI: 7.4652
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0519genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like53.45.9e-171121432556
      G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                   +AtPk+i+elm+v+gLt+ +vkSHLQkYRl+
  Gh_D03G0519 112 SVATPKQIRELMQVDGLTNGEVKSHLQKYRLH 143
                  57****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.65E-6112146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-14112146IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-13112143IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDQLPQGRVK LSLVGLGAGG TGSEAQVDYD FYFFFYRYCR SILISSAFIT NPQHCLHRRP  60
TSATSDECCS VQLIDGDGSF NDTGIESFIK EVKLHECGLS YTVVSIRGPQ SSVATPKQIR  120
ELMQVDGLTN GEVKSHLQKY RLHTRRLPAT TTTTTPANQS GLVLGGGHTW MCQDQFGESS  180
KGSSSQSGSP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.6881e-118boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431599e-33AC243159.1 Gossypium hirsutum clone MX146F17-jlq, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708846.11e-61PREDICTED: uncharacterized protein LOC107923141
RefseqXP_016708847.11e-61PREDICTED: uncharacterized protein LOC107923141
TrEMBLA0A2P5SCH79e-82A0A2P5SCH7_GOSBA; Uncharacterized protein
STRINGGorai.011G170200.15e-63(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1799626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.16e-16G2-like family protein