PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0824
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 635aa    MW: 70764.1 Da    PI: 4.7713
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0824genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.4e-5291351127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lp GfrF+Ptdeel+++yL+ k++g++ e+  vi+e+d++k+ePwdLp  + +k+++ ew+fF++ d+ky++++r+nrat++gyWkatgkd++++s k
  Gh_D03G0824   9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-GVIPEIDVCKWEPWDLPglSVIKSDDPEWFFFCPLDRKYPNSHRSNRATDKGYWKATGKDRTIKS-K 104
                  699************************999.99***************6447888888**************************************.8 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyr 127
                  ++l+g+kktLvfykgrapkg++t W+mheyr
  Gh_D03G0824 105 KSLIGMKKTLVFYKGRAPKGQRTYWIMHEYR 135
                  99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-604159IPR003441NAC domain
PROSITE profilePS5100555.1569159IPR003441NAC domain
PfamPF023651.2E-2610135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MAVLTMETLP LGFRFRPTDE ELINHYLRLK INGRHSEVGV IPEIDVCKWE PWDLPGLSVI  60
KSDDPEWFFF CPLDRKYPNS HRSNRATDKG YWKATGKDRT IKSKKSLIGM KKTLVFYKGR  120
APKGQRTYWI MHEYRPTIED LDGTAPGQSA FVLCRLFHKP EEKNDIVKYD EVEQTVCSAA  180
MTKSAPDDDT SSDLLQDTIS SETQAQNPDT SMRNGQITGD SCCNSHMTSD AEDHAAEETL  240
KYPLLGSNSD LYEPNCDEID YKVFSPMNSH FFEDLPPYMD SPYASDFGHD QNGSHFQDGT  300
SKQDISFPLL DEALNNRANF SEESNSWKNL VAGTEMPLSG NAFISKAMPP ETSYVKENGI  360
YNEMLPVQNE SDVGGPGWPG GFVDDKNSVQ MLTSLESSLT QTAPYDPVFI GGHIGGPENY  420
CVGQATSSTN SAIGDFNNLQ QLTSLRNHVN NGGVTGMRTT AYQPLQQPLE DYETLGTGFN  480
FRTRGPQEKP SLDNILNQGN APRRLRLLMK ISNVPMKVSA GCFDDGKLTS AGLGEEEEVQ  540
STLTEVTEAE ATGQTASSDE SKKENQLFKF TSSEDIGKEP CTKLRQRVKE DSKPCSSQMC  600
SKAEPMHKRS SSLSVLLLVF FIITILFILV TGIWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-43916215171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.219530.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740385.10.0PREDICTED: protein NTM1-like 9 isoform X1
TrEMBLA0A1U8NNF80.0A0A1U8NNF8_GOSHI; protein NTM1-like 9 isoform X1
STRINGGorai.003G073300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-122NAC 014