PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G1021

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 294aa MW: 34551.8 Da PI: 7.6725

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G1021	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.8	5.9e-55	7	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +ppGfrFhPt+eelv++yL+kk++ ++++l +vik+vd+yk+ePwdL++ ++ e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s Gh_D03G1021 7 VPPGFRFHPTEEELVDYYLRKKISLRRIDL-DVIKDVDLYKIEPWDLQAeicRIGReEQNEWYFFSHKDKKYPTGSRTNRATAAGFWKATGRDKAIYS 103 69**************************.9***********9546633332666********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Gh_D03G1021 104 -KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137 .8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-59	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.82	7	156	IPR003441	NAC domain
Pfam	PF02365	5.3E-28	8	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MNVLPQVPPG FRFHPTEEEL VDYYLRKKIS LRRIDLDVIK DVDLYKIEPW DLQAEICRIG 60 REEQNEWYFF SHKDKKYPTG SRTNRATAAG FWKATGRDKA IYSKHDLIGM RKTLVFYKGR 120 APNGQKSDWI MHEYRLETYE NGTPQARWVV CRVFKKRITA MRKVGEHESS CWYDDQVSFI 180 PDLDSPNQTS LSNNAYHHLP YSCKKELDLQ YQVPHDHYLQ SRDPLSCNPM AAFGQCSSFT 240 QAHHIQQTHH QHLNALFGNH SNEQAVDQAT DWRLLDTLVA SQLSQEEEIY RQSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-47	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.
Uniprot	TISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:17565617, ECO:0000269\|PubMed:18445131, ECO:0000269\|PubMed:25148240}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641180.1	0.0	PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-117	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2P5XWG3	0.0	A0A2P5XWG3_GOSBA; Uncharacterized protein
STRING	Gorai.003G114100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24786	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-116	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]