PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G1095

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 240aa MW: 27832.7 Da PI: 6.3137

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G1095	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.9	3.1e-26	131	181	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++kyF+ pi +AAke++v+lT+LK++CR+++I+RWPhRkiksl Gh_D03G1095 131 TASLELDEIQKYFDFPISKAAKEMNVGLTLLKKRCRELNIMRWPHRKIKSL 181 6899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.018	121	202	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-22	134	181	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MGLDFAKMEN GSEFDYCFNF EENPFGKVEF EVDSFYDFNS PALLPHPQAD NLCIQFMDFE 60 EISSDFALFD QNEDIMVDAK PIKAVVDSFD HHCGNITNSG GSSTEASRVI HEIEYGDSHG 120 QKIRSFRRKR TASLELDEIQ KYFDFPISKA AKEMNVGLTL LKKRCRELNI MRWPHRKIKS 180 LKSLIHNVKE LGLTNEIVML EEHQRMLEKV PDPELTDRTK KLRQACFKAN YKKRSLASCY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471149.1	1e-179	PREDICTED: protein RKD4
TrEMBL	A0A0D2QS71	1e-177	A0A0D2QS71_GOSRA; Uncharacterized protein
STRING	Gorai.003G121600.1	1e-178	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-44	RWP-RK domain-containing protein